Gene detail

Detail information of GWHGAAZE010722

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010558863.1	1.45629E-12	PREDICTED: endonuclease III homolog 1, chloroplastic [Tarenaya hassleriana]
Swissprot	tr\|Q9SIC4\|NTH1_ARATH	7E-14	Endonuclease III homolog 1, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03183} (Precursor)
trEMBL	tr\|K7M998\|K7M998_SOYBN	6E-13	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G03541.1}
TAIR10	AT2G31450.1	0.000000002	DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	20325604	20326787	-
GWHAAZE00000003	mRNA	20325604	20326787	-
GWHAAZE00000003	exon	20326680	20326787	-
GWHAAZE00000003	exon	20326014	20326238	-
GWHAAZE00000003	exon	20325870	20325936	-
GWHAAZE00000003	exon	20325604	20325791	-
GWHAAZE00000003	CDS	20326680	20326787	-
GWHAAZE00000003	CDS	20326014	20326238	-
GWHAAZE00000003	CDS	20325870	20325936	-
GWHAAZE00000003	CDS	20325604	20325791	-

Transcript Sequence
>GWHTAAZE010734 ATGAAGAAAGTGGCAAAAATATGCTGCCTCAAGTATGATGGAGACATTCCTAGTACACTGGAAGAATTGCTCCTACTTCCGGGCATTGGTCCCAAGATGGCACATCTGATTTTCCCATTTGTAATCTTTAGATTCCGAGTAGGAGTAGAGAAGATGAAAAGTCAGTACCTCCGTCCAGCTGGATTTAGGTTTCCTTTCAGAGTACCAAGAGTCGTCGATCATCCTCTTCGTAAACAAGTAATGGTGAATAGAGATAGAAGCAGAGCAGTTTATGGAGGGTTTGATAAAGGGGTTCTAACAGTCAGATTGGAGTTCAAGGAGTTTAGGTTCCAGGTAGCGGAATGGGTCAGCAGAGAACTGAAGAAGGCTGCTGGAGGAGTGGAAAGTGGTCGTTTCTCAAAAATCAGGGGAGGCATTGTTAGCAGAGAGGTGGTTATTCTGGCTTGTAAAAATGGAGAAGGTTGGTTGAAGGCGGCAGAGGCGTTACTCAAAATCATTAATAGACATGGGAATATGCAAGTAAATAACAGAGCAATGGGTTGTTATGCTGGAAGGAAAACTGAACAGAGTACACAGACGAGAAAATAG

Network for GWHGAAZE010722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00633.24	HHH	11	37	1.90E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10773	NTH	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0003677	molecular_function	DNA binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.943
	SRR3591706	second leaf	1.135
	SRR3591707	mature leaf	1.619
	SRR3591708	Shoot apex	2.552
	SRR3591709	Stem	1.813
	SRR3591710	White floral bud	1.767
	SRR3591711	White flower	1.429
	SRR3591712	Green floral bud	4.641
	SRR3591713	Yellow flower	1.805
SRP173429	SRR8316895	Juvenile bud stage	0.785
	SRR8316896	Juvenile bud stage	0.945
	SRR8316897	Juvenile bud stage	1.527
	SRR8316894	Third green stage	0.902
	SRR8316900	Third green stage	1.134
	SRR8316901	Third green stage	0.864
	SRR8316898	Complete white stage	0.413
	SRR8316899	Complete white stage	1.575
	SRR8316903	Complete white stage	0.211
	SRR8316902	Silver flowering stage	0.093
	SRR8316904	Silver flowering stage	0.352
	SRR8316905	Silver flowering stage	0.016
	SRR8316906	Gold flowering stage	0.648
	SRR8316907	Gold flowering stage	0.186
	SRR8316908	Gold flowering stage	1.420
SRP132670	SRR6706286	Control	0.910
	SRR6706287	Light intensity 50%	0.778
	SRR6706288	Light intensity 20%	0.901
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.856
	CNS0095593	Slightly white alabastrum(diploid) 2	0.670
	CNS0095594	Slightly white alabastrum(diploid) 3	0.414
	CNS0095595	Whole white alabastrum(diploid) 2	0.331
	CNS0095596	Whole white alabastrum(diploid) 3	0.605
	CNS0095597	Whole white alabastrum(diploid) 4	0.565
	CNS0095598	Silvery flower (diploied) 1	1.085
	CNS0095599	Silvery flower (diploied) 2	0.817
	CNS0095600	Silvery flower (diploied) 3	0.667
	CNS0095601	Golden flower (diploid) 1	1.110
	CNS0095602	Golden flower (diploid) 2	0.416
	CNS0095603	Golden flower (diploid) 3	0.667
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.431
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.174
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.638
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.122
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.287
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.936
	CNS0095610	Silvery flower (tetraploid) 1	0.677
	CNS0095611	Silvery flower (tetraploid) 2	0.878
	CNS0095612	Silvery flower (tetraploid) 3	1.507
	CNS0095613	Golden flower (tetraploid) 1	0.656
	CNS0095614	Golden flower (tetraploid) 2	0.596
	CNS0095615	Golden flower (tetraploid) 3	1.085
CRA001975	CRR073297	Stem 1	1.438
	CRR073298	Stem 2	1.199
	CRR073299	Stem 3	1.204
	CRR073300	Leaf 1	0.938
	CRR073301	Leaf 2	0.636
	CRR073302	Leaf 3	1.001
	CRR073303	Juvenile bud 1	0.816
	CRR073304	Juvenile bud 2	0.839
	CRR073305	Juvenile bud 3	1.538
	CRR073306	Third green 1	0.048
	CRR073307	Third green 2	0.232
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.040
	CRR073310	Second white 2	0.247
	CRR073311	Second white 3	0.194
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.240
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.452
	CRR073316	Gold flowering 2	1.341
	CRR073317	Gold flowering 3	1.868
	CRR073318	Tawny withering 1	1.564
	CRR073319	Tawny withering 2	1.650
	CRR073320	Tawny withering 3	0.807