Gene detail

Detail information of GWHGAAZE010728

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661012.1	1.258E-177	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	1E-113	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6HV81\|F6HV81_VITVI	5E-178	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58599.1}
TAIR10	AT4G08850.2	9E-90	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	20600618	20602495	-
GWHAAZE00000003	mRNA	20600618	20602495	-
GWHAAZE00000003	exon	20600618	20602495	-
GWHAAZE00000003	CDS	20600618	20602495	-

Transcript Sequence
>GWHTAAZE010740 ATGGCTTCAGTTGCTTGCTTCAATTATTTTTTGGCACTAGTAGTAGCAGTGACTGTATGGCTACAGGCAGGCATTATTGAAGCTTTAGCAGTAACATCAACTACTGCTACTAACAAAAATAATTTGTCGCAGCCGCCTTGGTTTAAAAGAGAGTTTGATGACCGATCTAATCACTGTAACTGGGAGGGCATTAGTTGCAATGAGGCAGGAAGTGTTACTTCTCTATCATGCCCTCAAAATCCTTATTTATATGGTGAAGCTCGTATAGCTGAGCTTAATTTGCCTTCGTATCAAAGCCTTGAAATCCTTGATCTTAGTGGTTGTGGGCTTGCAGGAACCATTCCACAAGAAATTGGTAGGCTTTCTAAACTGACCAGACTTTCTCTTTCTCACAATACTCTTTCAGGTGGCCTCCCCGTTTCACTGGCCAATCTCACCAGCCTAACATGGCTTAACCTTAGTAGTAACTCCTTTTCTAGTCCAATCCCATCCGAAATAGGAAATCTCGCGAATCTTTCATTCTTAGACCTTGGTAACAACTACTTTTCAGGTTCAATTCCTCCATCTGTTGGTTTCTTGACCCTTTTAACTTACTTGGACCTTTCTAGAAATCAACTCAACGGGTCCATCCCATCAAAAATAGGAAATCTCATGAATCTTTCATTCTTAAACCTTAGTAACAACTTTTCAGGTCCAATCCCTTCATCGATCTATGTCTTAACCCATTTAACCTTCTTGGACCTTTCTCGAAATCGACTCACCGGGTTCCTTCCGTTAGAAATACAGAATCTTAGCAATCTCCTTTATCTACTCCTTGAGGGGAACAACCTTTCGGGTACCATCCCTTCGACTATGGGACTCTTGACTAATTTAGCACGTATAGACCTTTCTCGCAATTCTTTTAATGGCACCATACCTGCTAATATTTCTTACTTGTCGAAATTAAACTACATAGATCTGTCATACAATAAACTTGTTGGCCCTGTCCCCACCAACCTATGGGACCTGTGTTCCTCCTCAAATATTCAGTTGCTGGGTAATAAGGGGTTGGAGGGCAACCTCAGTTGCGAATTAAATATAAAGGACCAGAACAAGGGGAGGAATATAATTAGGGACCTTATCCCTATTTTTATTCTTTTGGCGACCATTTCACTTGCCATGATGATGATCCTCGGCGCCCATAGGTTCCTTTCTTGGCATAAAGTTGCCAAAAACAAAAGCTTATCGGTAACAAAGCATGGAAATATGTGCTCCATATGGAATTATGATGGTACAATTGCATACGAAGACATCATCAAATCGACAAATGACTTTGATATCAAACATTGCATTGGAACCGGCAGTTATGGCAGCGTTTACAGGGCACAGCTGCCAAGTGGCAAAGTAGTTGCCTTAAAGAAACTTCATCGTTTTGAAGCTGAGGAGCCAGCTTTCGACAAGTGCTTCAAGAACGAGGTACAAGTGTTATCAAATATAAGACACAAAAACATTGTCAAGCTTTATGGGTTCTGTTTCCACAATCGGTGCATGTTCCTGGTTTATGAATACATGGAAAGAGGAAGCTTATTTTATGCCCTAAGAGACAATGCCGTGGCTATTGAACTGGATTGGATTAAAAGGGTGAGCATTGTTAAAGGGATAGCACATGCTTTATCTTACATGCATCACGATTGTACTCCACCTATTGCTCATCGAGACATTTCAAGTAATAACATTCTCTTAAACTCAAAACAAGACGCATTTGTAGCCGACTTTGGTGCAGCTAGATTGCTATCTCCTGATTCGTCCAACCAAACTTTAATTGCAGGCACTCGCGGATATATTGCTCCAGGTGAACGTTTTCTCTTATATAATTGTAGTATTCCCTTTTCGCCCTAA

Network for GWHGAAZE010728

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	99	157	1.70E-09
PF00560.34	LRR_1	242	264	0.4
PF00069.26	Pkinase	440	610	2.10E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.071
	SRR3591706	second leaf	0.615
	SRR3591707	mature leaf	4.706
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.054
	SRR3591710	White floral bud	0.079
	SRR3591711	White flower	0.930
	SRR3591712	Green floral bud	0.026
	SRR3591713	Yellow flower	0.539
SRP173429	SRR8316895	Juvenile bud stage	0.918
	SRR8316896	Juvenile bud stage	0.711
	SRR8316897	Juvenile bud stage	0.697
	SRR8316894	Third green stage	0.201
	SRR8316900	Third green stage	0.066
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.137
	SRR8316903	Complete white stage	0.090
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.090
	SRR6706287	Light intensity 50%	0.078
	SRR6706288	Light intensity 20%	0.072
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.777
	CNS0095593	Slightly white alabastrum(diploid) 2	0.427
	CNS0095594	Slightly white alabastrum(diploid) 3	0.863
	CNS0095595	Whole white alabastrum(diploid) 2	0.124
	CNS0095596	Whole white alabastrum(diploid) 3	0.155
	CNS0095597	Whole white alabastrum(diploid) 4	0.425
	CNS0095598	Silvery flower (diploied) 1	0.648
	CNS0095599	Silvery flower (diploied) 2	1.070
	CNS0095600	Silvery flower (diploied) 3	0.415
	CNS0095601	Golden flower (diploid) 1	1.326
	CNS0095602	Golden flower (diploid) 2	1.222
	CNS0095603	Golden flower (diploid) 3	0.609
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.288
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.072
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.356
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.092
	CNS0095613	Golden flower (tetraploid) 1	0.025
	CNS0095614	Golden flower (tetraploid) 2	0.056
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.088
	CRR073298	Stem 2	0.055
	CRR073299	Stem 3	0.112
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.077
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.034
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	8.665
	CRR073316	Gold flowering 2	9.666
	CRR073317	Gold flowering 3	7.674
	CRR073318	Tawny withering 1	0.007
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000