Gene detail

Detail information of GWHGAAZE010742

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004287176.1	0	PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|P48979\|PGLR_PRUPE	2E-180	Polygalacturonase (Precursor)
trEMBL	tr\|V9TI04\|V9TI04_TOBAC	0	Abscission polygalacturonase {ECO:0000313\|EMBL:AHC69830.1}
TAIR10	AT3G59850.1	1E-133	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	22637967	22640022	-
GWHAAZE00000003	mRNA	22637967	22640022	-
GWHAAZE00000003	exon	22637967	22638185	-
GWHAAZE00000003	exon	22638416	22638593	-
GWHAAZE00000003	exon	22638786	22639075	-
GWHAAZE00000003	exon	22639570	22640022	-
GWHAAZE00000003	CDS	22639570	22640022	-
GWHAAZE00000003	CDS	22638786	22639075	-
GWHAAZE00000003	CDS	22638416	22638593	-
GWHAAZE00000003	CDS	22637967	22638185	-

Transcript Sequence
>GWHTAAZE010754 ATGAAGATGGTGAAACAAAACAGCATCATTTTTCTTCTCCCAGTTCTTTTTATATTCTTATTCAAAAGTTCATTAGCAGCTTCAATTACTTACAATGTGGTTAGTTTAGGAGCCAAAGCCGACGGAAAGTCGGACTCGAGCAAGGCCTTCCTAAGCGCATGGGCTGCAGCTTGCGGCTCGGCTAATCCAGCCACTATCTACGTGCCAAACGGAAGGTTCTTGCTCGGTAGAATTACATTTGCCGGCCAAACGTGCAAAAATACTCTTATTACATTCCGCATTGATGGGACCCTAGTTGCCCCCTCGAATTACAATGTTATTGGAAACTCCGGTAATTGGATCACGTTCCAAAGAGTCACTGGAGTTTCCGTTCTTGGTGGAACCCTAGACGGTCAAGGGACTAGCCTTTGGTCTTGTAAAAACTCTGGCAAGAACTGCCCTACTGGAGCAACGTCACTAGGATTCTACAATTCGAACAACATTGTCGTCAATGGGCTAACTTCGTTAAACAGTCAAATGTTTCACATTATCATCTACGCTTGCCGCAACACCAAGCTACAAGGAACGAAGATCATGGCAGCCGGTAATAGCCCAAACACTGACGGGATTCACATACAATTATCCACCGGTGTCTCCATCTTGAACTCTCGCATTTCTACTGGTGACGATTGCATCTCAATCGGCCCGGGAAACTCTAATTTGTGGATTGAGAACGTTGCTTGTGGGCCAGGTCATGGGATAAGCATTGGGAGTCTAGGATGGGACTTGCAAGAACCTGGCGTACAAAATGTAACAGTTAAAACAGTTACTTTTAAGGGTACGCAAAACGGAGTGAGGATAAAGACCTGGGCTAGGGCTAGCAATGGCTTTGTTAAGAGTGTTCTTTTCCAACACCTTGTGATGGACAATGTCCAGAATCCTGTTTCGGGTGTAAAAATTAGCGACATAATGTATCAAGACATTCACGGAACATCGGCAACCGCGGTGGCCGTGAATTTTGATTGTAGCAAGAAGTATCCATGCAGTAACATAAAATTGGTGGATGTGAACCTCAGCTATAAGGATCAAACAGCACAAGCATCTTGCTCTAATGTTGGAGGAACTTCTTATGGTGTTGTTAAGCCTTCTAGCTGTTTGTAA

Network for GWHGAAZE010742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	58	366	8.20E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	16.941
	SRR3591711	White flower	0.327
	SRR3591712	Green floral bud	0.041
	SRR3591713	Yellow flower	8.401
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.048
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.018
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.026
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.030
	SRR8316905	Silver flowering stage	0.015
	SRR8316906	Gold flowering stage	0.292
	SRR8316907	Gold flowering stage	0.073
	SRR8316908	Gold flowering stage	0.131
SRP132670	SRR6706286	Control	0.069
	SRR6706287	Light intensity 50%	0.028
	SRR6706288	Light intensity 20%	0.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.181
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.021
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.013
	CNS0095599	Silvery flower (diploied) 2	0.178
	CNS0095600	Silvery flower (diploied) 3	0.512
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	1.588
	CNS0095603	Golden flower (diploid) 3	2.093
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.038
	CNS0095610	Silvery flower (tetraploid) 1	0.100
	CNS0095611	Silvery flower (tetraploid) 2	0.357
	CNS0095612	Silvery flower (tetraploid) 3	0.679
	CNS0095613	Golden flower (tetraploid) 1	3.202
	CNS0095614	Golden flower (tetraploid) 2	8.826
	CNS0095615	Golden flower (tetraploid) 3	32.177
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.074
	CRR073307	Third green 2	0.035
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.412
	CRR073310	Second white 2	0.304
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.956
	CRR073313	Silver flowering 2	0.654
	CRR073314	Silver flowering 3	3.495
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000