Gene detail

Detail information of GWHGAAZE010762

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006365151.1	0	PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|P18616\|NRPB1_ARATH	5E-48	DNA-directed RNA polymerase II subunit 1
trEMBL	tr\|K4DAY0\|K4DAY0_SOLLC	0	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}
TAIR10	AT5G60040.1	0	nuclear RNA polymerase C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	23935369	23946441	+
GWHAAZE00000003	mRNA	23935369	23946441	+
GWHAAZE00000003	exon	23935369	23935554	+
GWHAAZE00000003	exon	23936978	23937076	+
GWHAAZE00000003	exon	23937938	23938141	+
GWHAAZE00000003	exon	23938870	23939148	+
GWHAAZE00000003	exon	23940470	23940617	+
GWHAAZE00000003	exon	23940979	23941085	+
GWHAAZE00000003	exon	23941261	23941416	+
GWHAAZE00000003	exon	23941501	23941614	+
GWHAAZE00000003	exon	23943727	23943812	+
GWHAAZE00000003	exon	23944061	23944265	+
GWHAAZE00000003	exon	23945338	23945540	+
GWHAAZE00000003	exon	23946393	23946441	+
GWHAAZE00000003	CDS	23935369	23935554	+
GWHAAZE00000003	CDS	23936978	23937076	+
GWHAAZE00000003	CDS	23937938	23938141	+
GWHAAZE00000003	CDS	23938870	23939148	+
GWHAAZE00000003	CDS	23940470	23940617	+
GWHAAZE00000003	CDS	23940979	23941085	+
GWHAAZE00000003	CDS	23941261	23941416	+
GWHAAZE00000003	CDS	23941501	23941614	+
GWHAAZE00000003	CDS	23943727	23943812	+
GWHAAZE00000003	CDS	23944061	23944265	+
GWHAAZE00000003	CDS	23945338	23945540	+
GWHAAZE00000003	CDS	23946393	23946441	+

Transcript Sequence
>GWHTAAZE010774 ATGGAAGGACTTCATTGGAGGAACAGCCCTTTAATTATGTCACAGTGTGGTTCGAAAGGATCTCCTATAAACATTAGTCAGATGATTGCATGTGTTGGCCAGCAATCGGTTGGAGGTAAACGAGCTCCGAATGGATTTATAGATCGAAGCCTTCCTCATTTTAAACGAATGTCGAAAACCCCTGATGCTAAAGGATTTGTTGCGAACTCATTTTATAGTGGTCTAACAGCCACTGAATTTTTCTTCCATACAATGGGAGGGCGAGAAGGTCTTGTGGATACGGCGGTTAAAACAGCAGACACAGGATATATGTCTCGGAGACTAATTAAAGCTCTGGAGGACCTATCAGTTCATTATGACAACACAGTGCGAAATGCTAGTGCATCTATAGTTCAGTTCACATATGGGGATGATGGCATGGATCCTGCACAAATGGAAGGGAAAAGCGGATTTCCTTTGAACTTTGATAGATTATTATCTAAAGTCAAGGCTACATGTCCTGCTGGAGAGCATGTGGGCATGTCACCTTCCGAGATCCTTAGGGCGGTTGACGAAAGGCTGTCAAAATATGACATGACTCCTGAAGGGGGTTGCTCTATGGCCTTTAATGATAAGCTATCAGATTTCCTTAGAAAATGTACTGAAAGATCACAAAGCACAAGGAGGGCACTAAAATTAGATGAAGGGCAACTAACTGGTGGAGAAGAGCTCACATTTCTTGAAAATATTGCGCAAAATATATCTGGTATTACTCCTCGGCAGCTAGAGGTTTTCTTGGATACCTGCATCTCTCGTTATCATTTAAAGAAAATTGAAGCTGGAACTGCAATTGGTGCAATTGGAGCTCAGAGTATTGGAGAGCCAGGGACACAGATGACGTTAAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGACCAAGAAAATTAGCACGCCCATCATTACGACCAAACTTGAATGTCCTGATAATGCGAAAACTGCAAGAATGGTGAAAGGTCGTATTGAGAAAACATATTTAGGCCAGGTTGCAAAGAGTGTAAAGATAGTAATGGCAGCGAGATTAGCATCTATAGTTATCACACTTGACATGGAAATAATTCAAGCGGCACAGCTCTCCGTTGACGCTCATATTGTTAAAGAATCAATTTTACAGACTTCAAAAATAAAACTCAAGGAACAGCATGTTAAGGTTTTGGATGGCAGAAAGCTGGAAGTTTTTCCGGCTGGGGACAAAAATAAGCTTCATTTTGAACTCCAGTGGCTCAAAAATAAGCTTCCAACTGTTGTTGTGAAGGGCATCAATACAGTTGAACGTGCTATCATAAACAAATTAAAGGATAGCGTAACAAAGAAGGATAGTTATGAGTTGCTTGTAGAAGGAACGGGCCTACTAGCTGTTATGGGCACTGAAGGAGTAAAAGGAAATCATACGACTAGTAATCATATTATAGAAGTACAGCACACACTCGGTATTGAAGCTGCAAGAACCAAGATTATTGAAGAGATTCAGTATACCATGTCCAGTCATGGAATGAGCATAGATATTCGACATATGATGCTTTTAGCTGATCTTATGACTTTTAAGGGTGAAACTTTGGGAATCACGCGGCATGGGATTCAGAAAATGAAAGACAGTGTACTTATGCTGGCTTCATTTGAGAAAACCTCCGATCACCTTTTCAATGCTTCTGTAAACGGGAGGGATGACAAGATTGAAGGCGTTAGTGAATGCATCATTATGGGCATACCAATGCAGCTTGGCACTGGAATACTTAAAGTTAGACAGAGAGTTCCACAGGTTGAGTTGAGCCGTAATTCTGATCCAATTATATCTTAA

Network for GWHGAAZE010762

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05000.18	RNA_pol_Rpb1_4	4	67	1.60E-23
PF04998.18	RNA_pol_Rpb1_5	74	545	8.10E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03018	RPC1, POLR3A	RNA polymerase	map03020
K03018	RPC1, POLR3A	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.638
	SRR3591706	second leaf	1.592
	SRR3591707	mature leaf	3.182
	SRR3591708	Shoot apex	6.377
	SRR3591709	Stem	3.934
	SRR3591710	White floral bud	4.636
	SRR3591711	White flower	6.051
	SRR3591712	Green floral bud	7.796
	SRR3591713	Yellow flower	6.131
SRP173429	SRR8316895	Juvenile bud stage	3.482
	SRR8316896	Juvenile bud stage	5.497
	SRR8316897	Juvenile bud stage	1.603
	SRR8316894	Third green stage	2.103
	SRR8316900	Third green stage	4.951
	SRR8316901	Third green stage	5.073
	SRR8316898	Complete white stage	1.461
	SRR8316899	Complete white stage	6.421
	SRR8316903	Complete white stage	2.701
	SRR8316902	Silver flowering stage	1.474
	SRR8316904	Silver flowering stage	2.445
	SRR8316905	Silver flowering stage	1.137
	SRR8316906	Gold flowering stage	2.377
	SRR8316907	Gold flowering stage	3.597
	SRR8316908	Gold flowering stage	2.792
SRP132670	SRR6706286	Control	3.742
	SRR6706287	Light intensity 50%	3.280
	SRR6706288	Light intensity 20%	3.961
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.781
	CNS0095593	Slightly white alabastrum(diploid) 2	3.108
	CNS0095594	Slightly white alabastrum(diploid) 3	3.635
	CNS0095595	Whole white alabastrum(diploid) 2	2.516
	CNS0095596	Whole white alabastrum(diploid) 3	3.405
	CNS0095597	Whole white alabastrum(diploid) 4	3.129
	CNS0095598	Silvery flower (diploied) 1	3.053
	CNS0095599	Silvery flower (diploied) 2	3.988
	CNS0095600	Silvery flower (diploied) 3	4.082
	CNS0095601	Golden flower (diploid) 1	3.062
	CNS0095602	Golden flower (diploid) 2	3.301
	CNS0095603	Golden flower (diploid) 3	3.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.717
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.219
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.415
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.769
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.910
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.306
	CNS0095610	Silvery flower (tetraploid) 1	5.723
	CNS0095611	Silvery flower (tetraploid) 2	4.721
	CNS0095612	Silvery flower (tetraploid) 3	4.010
	CNS0095613	Golden flower (tetraploid) 1	2.482
	CNS0095614	Golden flower (tetraploid) 2	4.981
	CNS0095615	Golden flower (tetraploid) 3	3.173
CRA001975	CRR073297	Stem 1	3.267
	CRR073298	Stem 2	2.904
	CRR073299	Stem 3	1.610
	CRR073300	Leaf 1	2.723
	CRR073301	Leaf 2	2.434
	CRR073302	Leaf 3	1.418
	CRR073303	Juvenile bud 1	1.846
	CRR073304	Juvenile bud 2	1.034
	CRR073305	Juvenile bud 3	1.245
	CRR073306	Third green 1	0.241
	CRR073307	Third green 2	0.099
	CRR073308	Third green 3	0.438
	CRR073309	Second white 1	0.621
	CRR073310	Second white 2	0.409
	CRR073311	Second white 3	0.658
	CRR073312	Silver flowering 1	0.345
	CRR073313	Silver flowering 2	0.577
	CRR073314	Silver flowering 3	0.739
	CRR073315	Gold flowering 1	0.500
	CRR073316	Gold flowering 2	0.800
	CRR073317	Gold flowering 3	0.393
	CRR073318	Tawny withering 1	1.837
	CRR073319	Tawny withering 2	2.559
	CRR073320	Tawny withering 3	1.870