Detail information of GWHGAAZE010772


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010107245.10Uncharacterized WD repeat-containing protein [Morus notabilis]
Swissprottr|Q8H0T9|KTNB1_ARATH0.0000001Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|W9S4F6|W9S4F6_9ROSA0Uncharacterized WD repeat-containing protein {ECO:0000313|EMBL:EXC14269.1}
TAIR10AT1G55680.18E-150Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene2418612324194557-
GWHAAZE00000003mRNA2418612324194557-
GWHAAZE00000003exon2419453124194557-
GWHAAZE00000003exon2419371824193885-
GWHAAZE00000003exon2419351924193605-
GWHAAZE00000003exon2419161624191750-
GWHAAZE00000003exon2418873824188829-
GWHAAZE00000003exon2418853724188642-
GWHAAZE00000003exon2418753024187616-
GWHAAZE00000003exon2418612324186536-
GWHAAZE00000003CDS2419453124194557-
GWHAAZE00000003CDS2419371824193885-
GWHAAZE00000003CDS2419351924193605-
GWHAAZE00000003CDS2419161624191750-
GWHAAZE00000003CDS2418873824188829-
GWHAAZE00000003CDS2418853724188642-
GWHAAZE00000003CDS2418753024187616-
GWHAAZE00000003CDS2418612324186536-
Transcript Sequence

Network for GWHGAAZE010772

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402342714.90E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf83.122
SRR3591706second leaf33.741
SRR3591707mature leaf72.548
SRR3591708Shoot apex45.285
SRR3591709Stem90.696
SRR3591710White floral bud89.997
SRR3591711White flower94.915
SRR3591712Green floral bud67.330
SRR3591713Yellow flower79.980
SRP173429 SRR8316895Juvenile bud stage 55.934
SRR8316896Juvenile bud stage 81.415
SRR8316897Juvenile bud stage 55.215
SRR8316894Third green stage 24.733
SRR8316900Third green stage 70.009
SRR8316901Third green stage 86.213
SRR8316898Complete white stage 52.330
SRR8316899Complete white stage 109.358
SRR8316903Complete white stage 101.515
SRR8316902Silver flowering stage54.185
SRR8316904Silver flowering stage65.488
SRR8316905Silver flowering stage29.802
SRR8316906Gold flowering stage 92.278
SRR8316907Gold flowering stage 107.162
SRR8316908Gold flowering stage 98.784
SRP132670SRR6706286Control42.828
SRR6706287Light intensity 50%46.960
SRR6706288Light intensity 20%47.662
CNP0000432CNS0095592Slightly white alabastrum(diploid) 179.119
CNS0095593Slightly white alabastrum(diploid) 290.095
CNS0095594Slightly white alabastrum(diploid) 390.660
CNS0095595Whole white alabastrum(diploid) 274.304
CNS0095596Whole white alabastrum(diploid) 358.984
CNS0095597Whole white alabastrum(diploid) 467.997
CNS0095598Silvery flower (diploied) 198.744
CNS0095599Silvery flower (diploied) 289.620
CNS0095600Silvery flower (diploied) 381.069
CNS0095601Golden flower (diploid) 186.321
CNS0095602Golden flower (diploid) 284.170
CNS0095603Golden flower (diploid) 385.261
CNS0095604Slightly white alabastrum(tetraploid) 160.934
CNS0095605Slightly white alabastrum(tetraploid) 253.010
CNS0095606Slightly white alabastrum(tetraploid) 381.906
CNS0095607Whole white alabastrum(tetraploid) 150.948
CNS0095608Whole white alabastrum(tetraploid) 241.799
CNS0095609Whole white alabastrum(tetraploid) 366.403
CNS0095610Silvery flower (tetraploid) 195.830
CNS0095611Silvery flower (tetraploid) 271.595
CNS0095612Silvery flower (tetraploid) 383.905
CNS0095613Golden flower (tetraploid) 164.097
CNS0095614Golden flower (tetraploid) 273.935
CNS0095615Golden flower (tetraploid) 368.293
CRA001975CRR073297Stem 163.069
CRR073298Stem 259.181
CRR073299Stem 363.395
CRR073300Leaf 174.803
CRR073301Leaf 279.254
CRR073302Leaf 377.329
CRR073303Juvenile bud 174.221
CRR073304Juvenile bud 282.292
CRR073305Juvenile bud 365.208
CRR073306Third green 169.230
CRR073307Third green 254.273
CRR073308Third green 369.635
CRR073309Second white 143.724
CRR073310Second white 251.857
CRR073311Second white 343.267
CRR073312Silver flowering 147.414
CRR073313Silver flowering 240.001
CRR073314Silver flowering 347.165
CRR073315Gold flowering 161.593
CRR073316Gold flowering 282.319
CRR073317Gold flowering 341.195
CRR073318Tawny withering 1312.191
CRR073319Tawny withering 2542.359
CRR073320Tawny withering 3314.161