Gene detail

Detail information of GWHGAAZE010844

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI39502.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9ZPI1\|SYK_ARATH	Lysine--tRNA ligase
trEMBL	tr\|F6I4L4\|F6I4L4_VITVI	Lysine--tRNA ligase {ECO:0000256\|RuleBase:RU003748}
TAIR10	AT3G11710.1	lysyl-tRNA synthetase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	27224981	27234213	+
GWHAAZE00000003	mRNA	27224981	27234213	+
GWHAAZE00000003	exon	27224981	27225078	+
GWHAAZE00000003	exon	27226588	27226736	+
GWHAAZE00000003	exon	27226832	27226925	+
GWHAAZE00000003	exon	27227711	27227796	+
GWHAAZE00000003	exon	27228646	27228761	+
GWHAAZE00000003	exon	27228841	27228903	+
GWHAAZE00000003	exon	27229028	27229153	+
GWHAAZE00000003	exon	27229790	27230072	+
GWHAAZE00000003	exon	27230491	27230587	+
GWHAAZE00000003	exon	27230688	27230844	+
GWHAAZE00000003	exon	27232538	27232681	+
GWHAAZE00000003	exon	27232787	27232855	+
GWHAAZE00000003	exon	27232962	27233105	+
GWHAAZE00000003	exon	27234130	27234213	+
GWHAAZE00000003	CDS	27224981	27225078	+
GWHAAZE00000003	CDS	27226588	27226736	+
GWHAAZE00000003	CDS	27226832	27226925	+
GWHAAZE00000003	CDS	27227711	27227796	+
GWHAAZE00000003	CDS	27228646	27228761	+
GWHAAZE00000003	CDS	27228841	27228903	+
GWHAAZE00000003	CDS	27229028	27229153	+
GWHAAZE00000003	CDS	27229790	27230072	+
GWHAAZE00000003	CDS	27230491	27230587	+
GWHAAZE00000003	CDS	27230688	27230844	+
GWHAAZE00000003	CDS	27232538	27232681	+
GWHAAZE00000003	CDS	27232787	27232855	+
GWHAAZE00000003	CDS	27232962	27233105	+
GWHAAZE00000003	CDS	27234130	27234213	+

Transcript Sequence
>GWHTAAZE010856 ATGGAGGGCTCAGTTGAAGAAGCATCCAAAGCTGTTACTGATCTTTCGATTGATGGTTCCGCTTCTAATCCATCGGAACCAGAAGTTCTTAGCAAGAAGTTGAAGGCTCTTGCAGCTCAAAAGGAATCTGGGAAAAATCCATACCCTCATAAATTCCATGTTTCAATTTCCGTCCTTGAGTATGTAGAGAAGTATGGAGGCCTAAGTAGTGGGGAGCATCTTGAGGATGTGGAAGTATCTTTGGCTGGGCGTATTACAAACAAACGATCTTCATCGTCAAAGTTGTTCTTTTATGATTTGCATGGTGGTGGTGCCAAAGTCCAAGTTATGGCGGATGCAAGGAGATCTGACCTGGATGAAGCCGAATTTTCCAAGTTTCATTCTGGTGTAAAGCGTGGAGACATTGTGGGCATAAAAGGGTTCCCAGGAAAGAGTAAAAGAGGAGAATTAAGCATTTTCCCAAAATCATTTGTTGTGCTATCACATTGTCTACATATGATGCCAAGGCAAAAAGCTGCTGGTTCAGATAATGTCAATGTGAAGAAAGTTGAAGACTGGGTCCCAGGAAGTGGCAGGAATCCTGAAAGTTACGTACTAAAGGATCAGGAAACTCGATATCGCCAACGCTATTTGGATTTGATGTTGAACACAGAGGTTCGACACATATTCAAGACCAGGGCAAGGATCATTTCTTATATCAGACGATTTCTCGATAATCTTGATTTTTTGGAGGTTGAAACGCCAATGATGAACATGATTGCTGGAGGAGCAGCTGCACGTCCGTTTGTGACCCATCACAATGATCTAAACATGAAGCTGTTCATGCGTATAGCACCTGAACTTTATCTAAAGGAGCTTGTTGTTGGTGGACTCGACCGTGTCTACGAGATAGGGAAACAGTTCAGGAACGAGGGAATTGACTTGACCCATAATCCTGAATTCACCACCTGCGAGTTTTATATGGCTTTTGCAGACTACAATGACTTGATGGAGCTAACTGAAAAGATGTTGAGTGGAATGATCAAGGAACTTACAGGCGGTTATAAAGTTAAATATCATGCAAATGGGTTGGACAACGAGCCAATTGAAATCGACTTCACTCCACCTTTCAGAAGGATTGACATGATAGAAGATTTGGAGAAGATGGCAAATCTTAGCATTCCTAAGGATCTAGCGAGTGAGGAAGCTAGGAAATATCTGGCGGATGCATGCACAAAATTTGATATCAAATGCCCCCCACCTCAAACAACAGCTCGTTTGTTGGACAAACTTGTGGGGCACTTCCTGGAGGAGATGTGTGTAAACCCGACATTCATCATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGATCCAAGCCAGGCCTCACAGAACGTTTTGAATTGTTTATCAACAAGCATGAACTTTGCAATGCATACACGGAACTGAATGATCCTGTTGTACAGCGCCAGCGTTTTGCTGACCAACTCAAGGACCGACAATCAGGAGATGATGAAGCAATGGCGTTGGATGAAACATTCTGTATGGCTCTTGAATATGGGTTGCCTCCAACTGGTGGTTGGGGGTTGGGTATTGACAGGCTTGCTATGATGTTGACCGATTCACAGAACATTAAGGAAGTTCTGCTCTTTCCAGCCATGAAACCACAGGATGAACCTCCTGCTAAATTGACAACAGTACCACCACCTTCCAATACATAG

Network for GWHGAAZE010844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01336.26	tRNA_anti-codon	79	158	3.20E-13
PF00152.21	tRNA-synt_2	201	550	4.20E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04567	KARS, lysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006430	biological_process	lysyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0004824	molecular_function	lysine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.374
	SRR3591706	second leaf	42.805
	SRR3591707	mature leaf	28.120
	SRR3591708	Shoot apex	80.364
	SRR3591709	Stem	63.857
	SRR3591710	White floral bud	52.806
	SRR3591711	White flower	55.533
	SRR3591712	Green floral bud	74.534
	SRR3591713	Yellow flower	43.334
SRP173429	SRR8316895	Juvenile bud stage	34.822
	SRR8316896	Juvenile bud stage	46.705
	SRR8316897	Juvenile bud stage	29.017
	SRR8316894	Third green stage	19.080
	SRR8316900	Third green stage	55.003
	SRR8316901	Third green stage	54.405
	SRR8316898	Complete white stage	13.227
	SRR8316899	Complete white stage	60.366
	SRR8316903	Complete white stage	22.155
	SRR8316902	Silver flowering stage	13.499
	SRR8316904	Silver flowering stage	17.015
	SRR8316905	Silver flowering stage	8.353
	SRR8316906	Gold flowering stage	28.654
	SRR8316907	Gold flowering stage	21.584
	SRR8316908	Gold flowering stage	31.841
SRP132670	SRR6706286	Control	49.784
	SRR6706287	Light intensity 50%	50.782
	SRR6706288	Light intensity 20%	54.882
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.119
	CNS0095593	Slightly white alabastrum(diploid) 2	51.552
	CNS0095594	Slightly white alabastrum(diploid) 3	36.044
	CNS0095595	Whole white alabastrum(diploid) 2	38.488
	CNS0095596	Whole white alabastrum(diploid) 3	37.656
	CNS0095597	Whole white alabastrum(diploid) 4	29.309
	CNS0095598	Silvery flower (diploied) 1	36.429
	CNS0095599	Silvery flower (diploied) 2	35.194
	CNS0095600	Silvery flower (diploied) 3	41.127
	CNS0095601	Golden flower (diploid) 1	27.510
	CNS0095602	Golden flower (diploid) 2	34.828
	CNS0095603	Golden flower (diploid) 3	33.961
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.304
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.954
	CNS0095606	Slightly white alabastrum(tetraploid) 3	113.226
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.384
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.749
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.715
	CNS0095610	Silvery flower (tetraploid) 1	56.817
	CNS0095611	Silvery flower (tetraploid) 2	51.767
	CNS0095612	Silvery flower (tetraploid) 3	33.135
	CNS0095613	Golden flower (tetraploid) 1	23.289
	CNS0095614	Golden flower (tetraploid) 2	45.323
	CNS0095615	Golden flower (tetraploid) 3	25.122
CRA001975	CRR073297	Stem 1	54.435
	CRR073298	Stem 2	53.595
	CRR073299	Stem 3	55.936
	CRR073300	Leaf 1	61.926
	CRR073301	Leaf 2	57.524
	CRR073302	Leaf 3	58.795
	CRR073303	Juvenile bud 1	59.825
	CRR073304	Juvenile bud 2	41.561
	CRR073305	Juvenile bud 3	73.819
	CRR073306	Third green 1	8.251
	CRR073307	Third green 2	10.288
	CRR073308	Third green 3	11.832
	CRR073309	Second white 1	19.521
	CRR073310	Second white 2	16.675
	CRR073311	Second white 3	14.755
	CRR073312	Silver flowering 1	15.189
	CRR073313	Silver flowering 2	17.738
	CRR073314	Silver flowering 3	10.898
	CRR073315	Gold flowering 1	20.833
	CRR073316	Gold flowering 2	30.718
	CRR073317	Gold flowering 3	23.827
	CRR073318	Tawny withering 1	52.310
	CRR073319	Tawny withering 2	55.671
	CRR073320	Tawny withering 3	60.023