Detail information of GWHGAAZE010907


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009620077.11.99959E-67PREDICTED: transcription factor bHLH128-like isoform X2 [Nicotiana tomentosiformis]
Swissprottr|Q8H102|BH128_ARATH3E-28Transcription factor bHLH128
trEMBLtr|M1A859|M1A859_SOLTU5E-68Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400016794}
TAIR10AT1G05805.13E-25basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene3426637434276543-
GWHAAZE00000003mRNA3426637434276543-
GWHAAZE00000003exon3426637434266442-
GWHAAZE00000003exon3426763234267697-
GWHAAZE00000003exon3426799734268324-
GWHAAZE00000003exon3427046234270637-
GWHAAZE00000003exon3427202634272327-
GWHAAZE00000003exon3427608434276543-
GWHAAZE00000003CDS3427608434276543-
GWHAAZE00000003CDS3427202634272327-
GWHAAZE00000003CDS3427046234270637-
GWHAAZE00000003CDS3426799734268324-
GWHAAZE00000003CDS3426763234267697-
GWHAAZE00000003CDS3426637434266442-
Transcript Sequence

Network for GWHGAAZE010907

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH4244635.60E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.509
SRR3591706second leaf2.297
SRR3591707mature leaf5.749
SRR3591708Shoot apex6.859
SRR3591709Stem18.602
SRR3591710White floral bud5.496
SRR3591711White flower6.820
SRR3591712Green floral bud3.213
SRR3591713Yellow flower8.640
SRP173429 SRR8316895Juvenile bud stage 4.012
SRR8316896Juvenile bud stage 6.476
SRR8316897Juvenile bud stage 4.042
SRR8316894Third green stage 1.840
SRR8316900Third green stage 6.105
SRR8316901Third green stage 6.057
SRR8316898Complete white stage 4.394
SRR8316899Complete white stage 8.047
SRR8316903Complete white stage 6.745
SRR8316902Silver flowering stage7.002
SRR8316904Silver flowering stage9.065
SRR8316905Silver flowering stage5.563
SRR8316906Gold flowering stage 17.577
SRR8316907Gold flowering stage 21.376
SRR8316908Gold flowering stage 20.915
SRP132670SRR6706286Control8.830
SRR6706287Light intensity 50%6.346
SRR6706288Light intensity 20%6.479
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.406
CNS0095593Slightly white alabastrum(diploid) 23.891
CNS0095594Slightly white alabastrum(diploid) 35.011
CNS0095595Whole white alabastrum(diploid) 22.941
CNS0095596Whole white alabastrum(diploid) 32.521
CNS0095597Whole white alabastrum(diploid) 42.560
CNS0095598Silvery flower (diploied) 110.718
CNS0095599Silvery flower (diploied) 24.217
CNS0095600Silvery flower (diploied) 311.644
CNS0095601Golden flower (diploid) 18.051
CNS0095602Golden flower (diploid) 214.171
CNS0095603Golden flower (diploid) 312.792
CNS0095604Slightly white alabastrum(tetraploid) 12.271
CNS0095605Slightly white alabastrum(tetraploid) 22.816
CNS0095606Slightly white alabastrum(tetraploid) 34.509
CNS0095607Whole white alabastrum(tetraploid) 12.317
CNS0095608Whole white alabastrum(tetraploid) 21.791
CNS0095609Whole white alabastrum(tetraploid) 33.537
CNS0095610Silvery flower (tetraploid) 18.573
CNS0095611Silvery flower (tetraploid) 211.590
CNS0095612Silvery flower (tetraploid) 315.944
CNS0095613Golden flower (tetraploid) 19.089
CNS0095614Golden flower (tetraploid) 210.582
CNS0095615Golden flower (tetraploid) 311.153
CRA001975CRR073297Stem 18.847
CRR073298Stem 28.860
CRR073299Stem 39.305
CRR073300Leaf 17.470
CRR073301Leaf 28.351
CRR073302Leaf 37.563
CRR073303Juvenile bud 17.833
CRR073304Juvenile bud 25.176
CRR073305Juvenile bud 39.321
CRR073306Third green 15.376
CRR073307Third green 25.919
CRR073308Third green 35.719
CRR073309Second white 17.181
CRR073310Second white 29.898
CRR073311Second white 310.322
CRR073312Silver flowering 18.333
CRR073313Silver flowering 27.141
CRR073314Silver flowering 35.916
CRR073315Gold flowering 112.720
CRR073316Gold flowering 213.444
CRR073317Gold flowering 313.107
CRR073318Tawny withering 123.610
CRR073319Tawny withering 216.850
CRR073320Tawny withering 318.472