Gene detail

Detail information of GWHGAAZE010908

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP42889.1	hypothetical protein JCGZ_23831 [Jatropha curcas]
Swissprot	tr\|P0CB22\|ATX2_ARATH	Histone-lysine N-methyltransferase ATX2
trEMBL	tr\|A0A067LFK8\|A0A067LFK8_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP42889.1}
TAIR10	AT1G05830.2	trithorax-like protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	34349316	34385699	+
GWHAAZE00000003	mRNA	34349316	34385699	+
GWHAAZE00000003	exon	34349316	34349351	+
GWHAAZE00000003	exon	34353332	34353387	+
GWHAAZE00000003	exon	34353909	34354015	+
GWHAAZE00000003	exon	34357151	34357274	+
GWHAAZE00000003	exon	34357654	34357758	+
GWHAAZE00000003	exon	34359071	34359267	+
GWHAAZE00000003	exon	34360081	34360173	+
GWHAAZE00000003	exon	34360311	34360408	+
GWHAAZE00000003	exon	34361553	34361717	+
GWHAAZE00000003	exon	34361860	34361997	+
GWHAAZE00000003	exon	34362258	34362305	+
GWHAAZE00000003	exon	34363011	34363128	+
GWHAAZE00000003	exon	34363387	34363452	+
GWHAAZE00000003	exon	34363531	34363592	+
GWHAAZE00000003	exon	34370370	34370438	+
GWHAAZE00000003	exon	34370570	34370765	+
GWHAAZE00000003	exon	34372176	34372463	+
GWHAAZE00000003	exon	34379565	34379626	+
GWHAAZE00000003	exon	34379709	34379786	+
GWHAAZE00000003	exon	34380570	34380665	+
GWHAAZE00000003	exon	34381837	34381940	+
GWHAAZE00000003	exon	34382025	34382171	+
GWHAAZE00000003	exon	34385473	34385527	+
GWHAAZE00000003	exon	34385613	34385699	+
GWHAAZE00000003	CDS	34349316	34349351	+
GWHAAZE00000003	CDS	34353332	34353387	+
GWHAAZE00000003	CDS	34353909	34354015	+
GWHAAZE00000003	CDS	34357151	34357274	+
GWHAAZE00000003	CDS	34357654	34357758	+
GWHAAZE00000003	CDS	34359071	34359267	+
GWHAAZE00000003	CDS	34360081	34360173	+
GWHAAZE00000003	CDS	34360311	34360408	+
GWHAAZE00000003	CDS	34361553	34361717	+
GWHAAZE00000003	CDS	34361860	34361997	+
GWHAAZE00000003	CDS	34362258	34362305	+
GWHAAZE00000003	CDS	34363011	34363128	+
GWHAAZE00000003	CDS	34363387	34363452	+
GWHAAZE00000003	CDS	34363531	34363592	+
GWHAAZE00000003	CDS	34370370	34370438	+
GWHAAZE00000003	CDS	34370570	34370765	+
GWHAAZE00000003	CDS	34372176	34372463	+
GWHAAZE00000003	CDS	34379565	34379626	+
GWHAAZE00000003	CDS	34379709	34379786	+
GWHAAZE00000003	CDS	34380570	34380665	+
GWHAAZE00000003	CDS	34381837	34381940	+
GWHAAZE00000003	CDS	34382025	34382166	+
GWHAAZE00000003	three_prime_UTR	34382167	34382171	+
GWHAAZE00000003	three_prime_UTR	34385473	34385527	+
GWHAAZE00000003	three_prime_UTR	34385613	34385699	+

Transcript Sequence
>GWHTAAZE010920 ATGGAGAATCGGTGGTGGAGTTCGTCTAAGATGGAGAATGATGCCCAAATGGCTAATAATTCTGGTTCCGTTCGCACAAAGAGATGGGTTCGTTCAGATACTGATGGCCTTGATGTTGACGAGATGGTTGCCTTTGCTGCTAGTTTAGATGACTACCACGAGCTTGAGCCTGGGGATATTATATGGGCCAAAGTTACAGGTCATGCTATGTGGCCTGCAATTGTTTTGGATGAATCTCATGTTGGTGACCGTAAAGGTCTTAAAAAGATTTCTGGTGAAAAATCACTTCCCGTGCAATTCTTTGGTACCCATGATTTTGCTAGGGTTAGAACGAAACAAGTTATCTCATTTCTGAAAGGACTTCTTTCTTCTTTCCACCTAAAATGCAAGAAACCGGATTTCCAGAGAAGCTTGGAAGAAGCAAAAATGTATCTTAGTGAGCAGAAGTTTCCGAAAAGAATGTTGCTGCAGAGAAGCAGTAATGATGGTGATTGTGAATCTACAAGTGATCAGGATGATGGAAATGCCGATTTAGGTTTGGGAGATGATGAAGGGATCCAGAAGAAACTGGAGGGTTTTAAACATTGCCCATTAGAAATTGGGGATTTGCAAGTAATAAGCCTTGGAAAGATTGTCAAAGGCTCAAATTTTTTCCAGGATGAGAGATTTGTCTGCCCTGAAGGATATACTGCTATGAGGCAGTTTCCGTCAATAACAGATCCGAGTGTATGCACCTTGTATAAGATGGAAGTGCTGAGAGATAATGATTCAAAGACCCGACCTCTATTTAGTGTTACATCAGATAACGGAGAGCAGTTCAAAGGATCCACTCCTTCTGCCTGCTGGGACAAAATTTACAAAAGGATAAGGAAGATGCAAGTCAGTACTCCTGATGGTTTAAGATCTGCTGATGCGTCCAGAAAAAAATCTGGTTCTGACATGTTTGGTTTCTCTCATCCTGAAGTTTTGAAACTTATACAGGAGTTATCGAGCTCGAAACATGCCTCAAAACTATTTAAGTTGACATCTGGAAGATATCAGGACCTGCCTGTTGGTTACAGACCCGTTCATGTTAAATGGAAAGACCTCGATAAGTGCAATGTTTGCCATATGGATGAGGAGTACGAGAATAATCTGTTTCTGCAGTGTGATAAATGCAGAATGATGGTTCACGCTAGATGCTATGGAGAATTTGAGCCAGTCGATGGGAAACTTTGGTTATGCAACTTATGCCGTCCTGGGGCGCCTGAGTTTCCCCCACCCTGCTGCCTTTGCCCTCTTATAGGAGGTGCTATGAAGCCTACAACAGATGGGCGCTGGGCTCATCTTGCTTGTGCCATATGGATACCAGAGACTTGCTTATCTGATGTCAAGAAGATGGAGCCAATTGATGGGCTGAGTAGAATCAATAAGTGTTCAAACAATAATTGTTATGTAGCATATCATCCTCTTTGTGCACGCGCAGCTGGCTTTTGTGCTGAGCTTGAGGATGAGGACAGACTACATCTGATTCCTGTTGACGAGGATGAGGAGAACCAGTGCATCCGCCTGCTTTCCTTTTGTAAGAAGCATAGGCCGGCATCATCTAACGAGCGTTTGGTTGTTGTTGATGAACAAATTGCAAGTCAATGTTCAGACTACTCTCCTCCACCTAACCCATCTGGCTGTGCTCGTGGCGAGCCTTACAATTATTTTGGGAGACGAGGAAGGAAAGAACCTGAAGCCCTTGCTGCTGCATCCTTGAAGCGGTTATTTGTTGAGAACAGACCATACTTGGTTGGTGGCTACTGCCAACACGGGCCCTTGGGAAATACACTTTCTTCCAATAATACACTTGACGAACCTCGATCGTCTTTTATCCTTGGAAAGCTATCAAACTCTGAACTCGATGCTTGTAAGACCATCGTCTCTATGGCTGAGAAATACAGATATATGAGGAAAACCTTTAGGAGCAGACTTGCATTTGGGAAATCTGGGATACATGGATTTGGGATATTTGCTAAACAACCACATCGAGCAGGAGATATGGTGATTGAGTATACGGGTGAACTTGTTAGACCTCGTATAGCTGACAGAAGAGAACACTTGATATACAATTCATTAGTGGGTGCTGGGACATACATGTTCCGAATTGATGATGAGCGCGTCATTGATGCCACAAGGGCAGGAAGCATTGCACATTTGATTAATCACTCTTGTGAGCCAAATTGCTATTCAAGAGTTATAAGTGTCAATGGTGATGAGCACATAATCATATTTGCCAAAAGAGATATTAAAGAATGGGAAGAACTGACATATGACTACAGATTTTTTTCAACTGATGAGAGACTTGGTTGTTACTGTGGCTCCTCAAGATGCCGGGGTGTAGTCAATGATATTGAAGCTGAGGAACAATTGGCAAAGCTATATGCTCCGCTGAGCGAGTTAACTGACTGGCGAGGAGACTGAGAGAGAAGTTTCTTCTCAGTGATATACATGCCATGTGAGGTCCTTCTTTCTAAGGGCAAGGAACCTTGCTTGAGGCAAAAATTGAAGACCTTCAGCTTTTACACTTGATGTGAATCTCAAGTCTTAGCCTCTTAGTTGGTGTCATGA

Network for GWHGAAZE010908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00855.18	PWWP	56	145	3.60E-17
PF05964.15	FYRN	201	251	9.60E-13
PF05965.15	FYRC	261	334	1.20E-13
PF13831.7	PHD_2	378	412	2.00E-08
PF13832.7	zf-HC5HC2H_2	421	470	4.60E-13
PF00856.29	SET	662	768	2.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.594
	SRR3591706	second leaf	15.610
	SRR3591707	mature leaf	13.764
	SRR3591708	Shoot apex	29.683
	SRR3591709	Stem	18.456
	SRR3591710	White floral bud	20.654
	SRR3591711	White flower	18.239
	SRR3591712	Green floral bud	20.597
	SRR3591713	Yellow flower	14.046
SRP173429	SRR8316895	Juvenile bud stage	14.560
	SRR8316896	Juvenile bud stage	21.111
	SRR8316897	Juvenile bud stage	11.068
	SRR8316894	Third green stage	8.877
	SRR8316900	Third green stage	17.327
	SRR8316901	Third green stage	15.432
	SRR8316898	Complete white stage	3.844
	SRR8316899	Complete white stage	12.000
	SRR8316903	Complete white stage	9.507
	SRR8316902	Silver flowering stage	5.709
	SRR8316904	Silver flowering stage	10.241
	SRR8316905	Silver flowering stage	3.994
	SRR8316906	Gold flowering stage	12.946
	SRR8316907	Gold flowering stage	12.082
	SRR8316908	Gold flowering stage	14.570
SRP132670	SRR6706286	Control	11.505
	SRR6706287	Light intensity 50%	12.710
	SRR6706288	Light intensity 20%	13.118
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.569
	CNS0095593	Slightly white alabastrum(diploid) 2	12.299
	CNS0095594	Slightly white alabastrum(diploid) 3	14.556
	CNS0095595	Whole white alabastrum(diploid) 2	15.993
	CNS0095596	Whole white alabastrum(diploid) 3	14.413
	CNS0095597	Whole white alabastrum(diploid) 4	16.685
	CNS0095598	Silvery flower (diploied) 1	14.400
	CNS0095599	Silvery flower (diploied) 2	11.341
	CNS0095600	Silvery flower (diploied) 3	9.525
	CNS0095601	Golden flower (diploid) 1	12.094
	CNS0095602	Golden flower (diploid) 2	13.583
	CNS0095603	Golden flower (diploid) 3	11.283
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.637
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.307
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.981
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.884
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.438
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.514
	CNS0095610	Silvery flower (tetraploid) 1	15.811
	CNS0095611	Silvery flower (tetraploid) 2	11.264
	CNS0095612	Silvery flower (tetraploid) 3	13.138
	CNS0095613	Golden flower (tetraploid) 1	10.378
	CNS0095614	Golden flower (tetraploid) 2	11.104
	CNS0095615	Golden flower (tetraploid) 3	9.267
CRA001975	CRR073297	Stem 1	16.649
	CRR073298	Stem 2	15.086
	CRR073299	Stem 3	8.655
	CRR073300	Leaf 1	15.111
	CRR073301	Leaf 2	12.967
	CRR073302	Leaf 3	7.122
	CRR073303	Juvenile bud 1	7.403
	CRR073304	Juvenile bud 2	5.302
	CRR073305	Juvenile bud 3	6.557
	CRR073306	Third green 1	3.136
	CRR073307	Third green 2	3.150
	CRR073308	Third green 3	2.985
	CRR073309	Second white 1	1.093
	CRR073310	Second white 2	3.510
	CRR073311	Second white 3	3.333
	CRR073312	Silver flowering 1	2.432
	CRR073313	Silver flowering 2	2.799
	CRR073314	Silver flowering 3	3.160
	CRR073315	Gold flowering 1	2.808
	CRR073316	Gold flowering 2	6.360
	CRR073317	Gold flowering 3	1.714
	CRR073318	Tawny withering 1	7.114
	CRR073319	Tawny withering 2	8.235
	CRR073320	Tawny withering 3	7.692