Gene detail

Detail information of GWHGAAZE010928

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251899.1	1.05382E-86	PREDICTED: uncharacterized protein LOC104593637 [Nelumbo nucifera]
trEMBL	tr\|M5XTI6\|M5XTI6_PRUPE	4E-80	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22365.1}
TAIR10	AT5G07900.1	3E-28	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35414847	35415776	-
GWHAAZE00000003	mRNA	35414847	35415776	-
GWHAAZE00000003	exon	35414847	35415776	-
GWHAAZE00000003	CDS	35414847	35415776	-

Transcript Sequence
>GWHTAAZE010940 ATGGCCAATCTCACTCTTAAGAGATTATTACTCGTCTCTTCTTATTTGCCCCATCAATCACTCAGGAGAATCACACCCCAAATTTCAACCATTTGTCAAAGACATTTTCTTAGTACAGTTTCAGTTTCAGATTCAGATTCAGATAAATCATCATTGTTATTGTCATCATTCACAGTTCAATACCTTATGAACACATGCGGGCTTCCCTTAAAAGATGCCCTCTCTGCATCCCAAAAGTTCCAATTAAAGGAAAGCAAGTCACAAAAACACGAATCTGTCTTGTTCCTTTTGAGATCCTTTCAGTTCTCTGATACCCATATCAAGAAACTGCTGATTAAGTTACCCAAGATCCTTCAAGCGAAGGTGAATGATAATCTAAAGCCGAAACTAGAGTACCTTAGGGATAATGGGTTTGTGGGTCATCTCCTCCCGGACCTAATTGTATTGAATCCAGGCATTTTGAAAAGAAGCTTGAGTGGCTGCATAAAACCAACGTTTGAATTCCTTAGGAAGTACATGCATACGAGTGATAAAATTGTCGCTGCCATCAAAAGAACGTCATGGTTCTGCGCATTTTATTTGAAGGGAACTATGGAGCCAAATATCGAATTCTTGTTAAGTGAAGGGGTTACTGCTAGCAGTATAGAGAGATTGGTTTTGTGGCAGCCGAGCACCTTGATGCAGAGGCTTGATAGAGTTGTCTATGCAGTTCGGACTGTCAAAGAATTGGGGCTCAACCCTAGTACTCCTAAGTGTGTAGAATCCATTCGAGTGTTGCTCTCCTTGAGCGAGTCAACATGGAATCGGAAAGTGCAAAATTTTAAGACTTTGGGATGGTCTGACGAGGAGATTTGGTTGACCTTTATGCGGCATTCAAGCTGTTTCTCTTTTTCTGAGGAGAGAATCAAGAGGACAGTGGATTTTTTGTGA

Network for GWHGAAZE010928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	96	309	2.20E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.000
	SRR3591706	second leaf	1.836
	SRR3591707	mature leaf	2.030
	SRR3591708	Shoot apex	2.952
	SRR3591709	Stem	3.464
	SRR3591710	White floral bud	3.548
	SRR3591711	White flower	2.845
	SRR3591712	Green floral bud	2.926
	SRR3591713	Yellow flower	1.689
SRP173429	SRR8316895	Juvenile bud stage	3.607
	SRR8316896	Juvenile bud stage	3.589
	SRR8316897	Juvenile bud stage	1.708
	SRR8316894	Third green stage	2.037
	SRR8316900	Third green stage	5.380
	SRR8316901	Third green stage	5.449
	SRR8316898	Complete white stage	1.560
	SRR8316899	Complete white stage	6.744
	SRR8316903	Complete white stage	3.007
	SRR8316902	Silver flowering stage	1.880
	SRR8316904	Silver flowering stage	2.873
	SRR8316905	Silver flowering stage	1.802
	SRR8316906	Gold flowering stage	5.440
	SRR8316907	Gold flowering stage	4.071
	SRR8316908	Gold flowering stage	4.150
SRP132670	SRR6706286	Control	1.705
	SRR6706287	Light intensity 50%	1.735
	SRR6706288	Light intensity 20%	2.663
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.186
	CNS0095593	Slightly white alabastrum(diploid) 2	4.748
	CNS0095594	Slightly white alabastrum(diploid) 3	2.742
	CNS0095595	Whole white alabastrum(diploid) 2	4.137
	CNS0095596	Whole white alabastrum(diploid) 3	4.226
	CNS0095597	Whole white alabastrum(diploid) 4	5.226
	CNS0095598	Silvery flower (diploied) 1	2.041
	CNS0095599	Silvery flower (diploied) 2	2.540
	CNS0095600	Silvery flower (diploied) 3	6.089
	CNS0095601	Golden flower (diploid) 1	2.546
	CNS0095602	Golden flower (diploid) 2	5.835
	CNS0095603	Golden flower (diploid) 3	5.336
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.350
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.673
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.151
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.466
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.849
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.203
	CNS0095610	Silvery flower (tetraploid) 1	4.343
	CNS0095611	Silvery flower (tetraploid) 2	4.235
	CNS0095612	Silvery flower (tetraploid) 3	4.377
	CNS0095613	Golden flower (tetraploid) 1	3.010
	CNS0095614	Golden flower (tetraploid) 2	5.604
	CNS0095615	Golden flower (tetraploid) 3	4.355
CRA001975	CRR073297	Stem 1	4.086
	CRR073298	Stem 2	4.733
	CRR073299	Stem 3	3.106
	CRR073300	Leaf 1	4.213
	CRR073301	Leaf 2	3.666
	CRR073302	Leaf 3	4.276
	CRR073303	Juvenile bud 1	2.688
	CRR073304	Juvenile bud 2	2.369
	CRR073305	Juvenile bud 3	2.919
	CRR073306	Third green 1	1.207
	CRR073307	Third green 2	0.255
	CRR073308	Third green 3	0.671
	CRR073309	Second white 1	2.497
	CRR073310	Second white 2	3.060
	CRR073311	Second white 3	2.386
	CRR073312	Silver flowering 1	2.560
	CRR073313	Silver flowering 2	2.381
	CRR073314	Silver flowering 3	0.444
	CRR073315	Gold flowering 1	3.577
	CRR073316	Gold flowering 2	4.639
	CRR073317	Gold flowering 3	2.208
	CRR073318	Tawny withering 1	2.772
	CRR073319	Tawny withering 2	2.532
	CRR073320	Tawny withering 3	1.774