Gene detail

Detail information of GWHGAAZE010930

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251899.1	1.294E-110	PREDICTED: uncharacterized protein LOC104593637 [Nelumbo nucifera]
trEMBL	tr\|A0A067L028\|A0A067L028_JATCU	2E-104	Uncharacterized protein {ECO:0000313\|EMBL:KDP40593.1}
TAIR10	AT5G07900.1	3E-41	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35478206	35479456	-
GWHAAZE00000003	mRNA	35478206	35479456	-
GWHAAZE00000003	exon	35478206	35479456	-
GWHAAZE00000003	CDS	35478206	35479456	-

Transcript Sequence
>GWHTAAZE010942 ATGGCAAATCCCACTCTGAAGAGATCACTATTCCTATCTTGTTTTCCCACCCAATTTCTCAGAAGTATAATCACCCCACAATCCTCAACTATTTGTAGAAAACATTTTCTTAGTACAGTTTCAGATTCAGATAAATCATCATCATCATCATTGTCATCAATGTCATCCTTCACTGTACAATACCTAATGAACACATGTGGGTTTCCGTTGGAAGATGCCCTTTCGGCTTCCGAAAAGTTGCAATTGAATGAAAACAAATCACATAAACACCAATCTGTGTTGGAACTTTTGAGATCTTTTCATTTCTATGATACCCACATCACCAAACTCCTCACTACGTGCCCCAAGATCCTTCAAATGAAGGTGAATAACAATCTTAAGCCTAAATTAGAGTACCTCAGGGATAATGGGCTTGAGGTTCGGCTCCTCCCGGACCTAATTGTATCAAATCCCGAAATTTTGACTAGAAGCTTGAGTGGATTTACAAAACCAAGATTGGAATTCCTTAAGAAATATTTACACACCAATGACAAAGTTTTCGGTGCAGTTAAACGTACTTCCTGGCTTTGGAGACTTAATTTGAAGGGAATTATGGAGCGGAATATTGAGTTGTTGTTAAGTGAAGGGGTGACTGCTAGAAATATAGAGAGATGGGTTCTCTGGCAGCCGAGAACTTTGATGCACAGGGTTGATAGAATTGTCTATGCGATTTGGACTGTCAAAGAGTTGGGGCTCGACCCTAGTTCTCTTACATGTGTACGAGCTATTCAAGTGTTGCTCTCAATCAGCCATTCAACATGGAATCAGAAAGCACAAAATTTTAAGGCTTTAGGATGGTCTGAGGAAATGATCTGGTCCGCATTTAAGCGGGATTCATTGTGTTTCGCTTTGTCTGAGGAGAAAGTCAGGAGGGCAATGGATTTTTATGTGAACACGATGAAATTGAAGCCGGAGGCTATAGCAGCTCAACCTAATCTTCTTGCATACGCAACGGATACAAGAATTCGCCCACGGTATAGTGTTATAAAGGTTTTGGAGTGTCGGAAGCTGCTTAAGAAGAAATTTAAGGTTTTTTGGGTATTTAGACTGACTGAGAAGGATTTCATGGAAAAATTTGTGGACAAGCATTTGGACCAAATTCCAAACTTGTTGGAGGTATATCGTGGTACAATCACGGTTGAGAAGAGGGATCAATTAGAACAAAGTAAGTTAAACCTCCTATGTGGAGATATGTGCTGTACAATGAAATGA

Network for GWHGAAZE010930

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	94	232	9.40E-16
PF02536.15	mTERF	199	368	2.50E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.765
	SRR3591706	second leaf	2.411
	SRR3591707	mature leaf	2.984
	SRR3591708	Shoot apex	3.092
	SRR3591709	Stem	3.348
	SRR3591710	White floral bud	3.400
	SRR3591711	White flower	6.374
	SRR3591712	Green floral bud	6.156
	SRR3591713	Yellow flower	5.031
SRP173429	SRR8316895	Juvenile bud stage	1.780
	SRR8316896	Juvenile bud stage	2.107
	SRR8316897	Juvenile bud stage	1.713
	SRR8316894	Third green stage	1.416
	SRR8316900	Third green stage	3.624
	SRR8316901	Third green stage	3.205
	SRR8316898	Complete white stage	1.093
	SRR8316899	Complete white stage	3.491
	SRR8316903	Complete white stage	1.680
	SRR8316902	Silver flowering stage	1.553
	SRR8316904	Silver flowering stage	2.103
	SRR8316905	Silver flowering stage	0.924
	SRR8316906	Gold flowering stage	2.098
	SRR8316907	Gold flowering stage	2.262
	SRR8316908	Gold flowering stage	3.213
SRP132670	SRR6706286	Control	1.691
	SRR6706287	Light intensity 50%	1.657
	SRR6706288	Light intensity 20%	1.431
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.931
	CNS0095593	Slightly white alabastrum(diploid) 2	3.456
	CNS0095594	Slightly white alabastrum(diploid) 3	3.376
	CNS0095595	Whole white alabastrum(diploid) 2	2.440
	CNS0095596	Whole white alabastrum(diploid) 3	3.027
	CNS0095597	Whole white alabastrum(diploid) 4	1.985
	CNS0095598	Silvery flower (diploied) 1	2.749
	CNS0095599	Silvery flower (diploied) 2	3.363
	CNS0095600	Silvery flower (diploied) 3	3.915
	CNS0095601	Golden flower (diploid) 1	4.571
	CNS0095602	Golden flower (diploid) 2	3.433
	CNS0095603	Golden flower (diploid) 3	2.874
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.502
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.679
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.204
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.417
	CNS0095610	Silvery flower (tetraploid) 1	4.307
	CNS0095611	Silvery flower (tetraploid) 2	5.553
	CNS0095612	Silvery flower (tetraploid) 3	3.535
	CNS0095613	Golden flower (tetraploid) 1	3.149
	CNS0095614	Golden flower (tetraploid) 2	3.691
	CNS0095615	Golden flower (tetraploid) 3	5.051
CRA001975	CRR073297	Stem 1	1.433
	CRR073298	Stem 2	2.216
	CRR073299	Stem 3	0.996
	CRR073300	Leaf 1	2.289
	CRR073301	Leaf 2	1.743
	CRR073302	Leaf 3	1.881
	CRR073303	Juvenile bud 1	1.106
	CRR073304	Juvenile bud 2	0.831
	CRR073305	Juvenile bud 3	1.066
	CRR073306	Third green 1	0.558
	CRR073307	Third green 2	0.809
	CRR073308	Third green 3	0.564
	CRR073309	Second white 1	1.535
	CRR073310	Second white 2	0.707
	CRR073311	Second white 3	0.900
	CRR073312	Silver flowering 1	0.934
	CRR073313	Silver flowering 2	0.971
	CRR073314	Silver flowering 3	1.088
	CRR073315	Gold flowering 1	1.380
	CRR073316	Gold flowering 2	1.139
	CRR073317	Gold flowering 3	1.213
	CRR073318	Tawny withering 1	0.467
	CRR073319	Tawny withering 2	1.282
	CRR073320	Tawny withering 3	1.397