Gene detail

Detail information of GWHGAAZE010931

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251899.1	4.5335E-115	PREDICTED: uncharacterized protein LOC104593637 [Nelumbo nucifera]
trEMBL	tr\|M5XTI6\|M5XTI6_PRUPE	7E-106	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22365.1}
TAIR10	AT5G07900.1	2E-49	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35496195	35497388	-
GWHAAZE00000003	mRNA	35496195	35497388	-
GWHAAZE00000003	exon	35496195	35497388	-
GWHAAZE00000003	CDS	35496195	35497388	-

Transcript Sequence
>GWHTAAZE010943 ATGGCAAATCCCACTCTGAAGAGATCACTATTCCTATCTTGTTTTCCCACCCAATTTCTCAGAAGTATAATCACCCCACAATCCTCAACTATTTGTAGAAAACATTTGCTTAGTACAGTTTCAGATTCAGATAAATCATCATCATCATCATTGTCATCAATGTCATCCTTCACTGTACAATACCTAATGAACAGATGTGGGTTTCCGTTGGAAGATGCCCTTTCGGCTTCCGAAAAGTTGCAATTGAATGAAAACAAGTCACATAAACACCAATCTGTCTTGGAACTTTTGAGATCTTTTCATTTCTATGATACCCACATCACCAAACTCCTCATTAAGCGCCCCAAGATCCTTCAAATGAAGGTGAATAATAATCTTAAGCCTAAATTAGAGTACCTCAGGGATAATGGGCTTGAGGTTCGGCTCCTCCCGGACCTAATTGTATCAAATCCCGAAATTTTGACTAGAAGCTTGAGTGGATTTACAAAACCAAGATTGGAATTCCTTAAGAAATATTTACACACCAATGACAAAGTTTTCGGTGCTGTTAAACGTACTTCTTGGCTTTGGAGATTTAATTTGAAGGGAATTATGGAGCGGAATATCGAGTTGTTGTTAAGTGAAGGGGTGACTTCTAGAAATATAGAGAGATTGGTTTTCTGGCAGCCGAGAATTTTGATGCACAGGGTTGATAGAATTGTCTATGCGATTCGGACTGTCAAAGAGTTGGGGCTCGACCCTAGTTCTTGTACATGTGTACAAGCTATTCATGTGTTGCTCTCAATCAGCCATTCAACATGGAATCAGAAAGTGCAAAATTTTAAGACTTTAGGATGGTCTGAGGAAATGATCTGGTCCGCATTTAAGCGGTATTCAATGTGTTTCGCTTTGTCTGAGGAGAAAGTCAGGAGGACAATGGATTTTTATGTGAACACGATGAAATTGAAGCCGGAGGTTATAGCAGCTCAACCTAATCTTCTTGTATACGCAATGAATACAAGAATTCGCCCACGGTATAGTGTTATAAAGGTTTTGGAGTGTCGGAAGCTGCTTAAGAAGAAATTTAAGGTTTGTTGGGTATTTAAACTGACTGAGAAGGATTTCATGGAAAAATATGTGGACAAGCATTTGGACCAAATTCCAAACTTGTTGGAGGTATATCGTGGTACAATCGCGGTTGAGAAGATGGATTAA

Network for GWHGAAZE010931

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	94	244	4.50E-17
PF02536.15	mTERF	199	368	3.00E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.776
	SRR3591706	second leaf	0.594
	SRR3591707	mature leaf	0.376
	SRR3591708	Shoot apex	1.656
	SRR3591709	Stem	0.901
	SRR3591710	White floral bud	1.731
	SRR3591711	White flower	1.994
	SRR3591712	Green floral bud	1.857
	SRR3591713	Yellow flower	1.457
SRP173429	SRR8316895	Juvenile bud stage	1.338
	SRR8316896	Juvenile bud stage	2.063
	SRR8316897	Juvenile bud stage	0.695
	SRR8316894	Third green stage	0.583
	SRR8316900	Third green stage	3.501
	SRR8316901	Third green stage	3.576
	SRR8316898	Complete white stage	0.993
	SRR8316899	Complete white stage	2.261
	SRR8316903	Complete white stage	0.993
	SRR8316902	Silver flowering stage	0.931
	SRR8316904	Silver flowering stage	1.217
	SRR8316905	Silver flowering stage	0.475
	SRR8316906	Gold flowering stage	1.408
	SRR8316907	Gold flowering stage	1.200
	SRR8316908	Gold flowering stage	1.623
SRP132670	SRR6706286	Control	1.457
	SRR6706287	Light intensity 50%	1.246
	SRR6706288	Light intensity 20%	1.390
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.368
	CNS0095593	Slightly white alabastrum(diploid) 2	2.136
	CNS0095594	Slightly white alabastrum(diploid) 3	1.390
	CNS0095595	Whole white alabastrum(diploid) 2	3.568
	CNS0095596	Whole white alabastrum(diploid) 3	2.480
	CNS0095597	Whole white alabastrum(diploid) 4	3.159
	CNS0095598	Silvery flower (diploied) 1	1.679
	CNS0095599	Silvery flower (diploied) 2	1.878
	CNS0095600	Silvery flower (diploied) 3	2.653
	CNS0095601	Golden flower (diploid) 1	2.127
	CNS0095602	Golden flower (diploid) 2	2.181
	CNS0095603	Golden flower (diploid) 3	2.024
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.824
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.662
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.474
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.083
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.382
	CNS0095610	Silvery flower (tetraploid) 1	2.307
	CNS0095611	Silvery flower (tetraploid) 2	3.057
	CNS0095612	Silvery flower (tetraploid) 3	3.181
	CNS0095613	Golden flower (tetraploid) 1	1.366
	CNS0095614	Golden flower (tetraploid) 2	2.106
	CNS0095615	Golden flower (tetraploid) 3	1.990
CRA001975	CRR073297	Stem 1	0.753
	CRR073298	Stem 2	1.048
	CRR073299	Stem 3	1.055
	CRR073300	Leaf 1	0.735
	CRR073301	Leaf 2	1.287
	CRR073302	Leaf 3	0.526
	CRR073303	Juvenile bud 1	0.260
	CRR073304	Juvenile bud 2	0.695
	CRR073305	Juvenile bud 3	0.344
	CRR073306	Third green 1	0.195
	CRR073307	Third green 2	0.151
	CRR073308	Third green 3	0.159
	CRR073309	Second white 1	0.573
	CRR073310	Second white 2	1.159
	CRR073311	Second white 3	0.518
	CRR073312	Silver flowering 1	0.304
	CRR073313	Silver flowering 2	0.831
	CRR073314	Silver flowering 3	0.349
	CRR073315	Gold flowering 1	0.796
	CRR073316	Gold flowering 2	0.254
	CRR073317	Gold flowering 3	0.102
	CRR073318	Tawny withering 1	0.312
	CRR073319	Tawny withering 2	0.798
	CRR073320	Tawny withering 3	0.259