Detail information of GWHGAAZE010941


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010049705.14.56243E-07PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Eucalyptus grandis]
Swissprottr|Q9SAC0|ZCIS_ARATH0.0000000615-cis-zeta-carotene isomerase, chloroplastic (Precursor)
trEMBLtr|A0A059CVI0|A0A059CVI0_EUCGR0.0000002Uncharacterized protein {ECO:0000313|EMBL:KCW82458.1}
TAIR10AT1G10830.10.000000315-cis-zeta-carotene isomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene3572945535730664-
GWHAAZE00000003mRNA3572945535730664-
GWHAAZE00000003exon3573060235730664-
GWHAAZE00000003exon3572945535729625-
GWHAAZE00000003CDS3573060235730664-
GWHAAZE00000003CDS3572945535729625-
Transcript Sequence

Network for GWHGAAZE010941

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15744Z-ISO Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.957
SRR3591706second leaf1.345
SRR3591707mature leaf1.306
SRR3591708Shoot apex1.885
SRR3591709Stem0.000
SRR3591710White floral bud14.649
SRR3591711White flower7.814
SRR3591712Green floral bud2.286
SRR3591713Yellow flower7.556
SRP173429 SRR8316895Juvenile bud stage 0.350
SRR8316896Juvenile bud stage 0.719
SRR8316897Juvenile bud stage 1.231
SRR8316894Third green stage 0.845
SRR8316900Third green stage 2.269
SRR8316901Third green stage 2.370
SRR8316898Complete white stage 5.371
SRR8316899Complete white stage 2.799
SRR8316903Complete white stage 9.357
SRR8316902Silver flowering stage8.214
SRR8316904Silver flowering stage13.507
SRR8316905Silver flowering stage8.036
SRR8316906Gold flowering stage 20.779
SRR8316907Gold flowering stage 13.717
SRR8316908Gold flowering stage 22.405
SRP132670SRR6706286Control1.785
SRR6706287Light intensity 50%2.367
SRR6706288Light intensity 20%2.099
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.034
CNS0095593Slightly white alabastrum(diploid) 20.398
CNS0095594Slightly white alabastrum(diploid) 30.137
CNS0095595Whole white alabastrum(diploid) 21.182
CNS0095596Whole white alabastrum(diploid) 30.864
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.338
CNS0095599Silvery flower (diploied) 23.357
CNS0095600Silvery flower (diploied) 38.079
CNS0095601Golden flower (diploid) 11.376
CNS0095602Golden flower (diploid) 23.987
CNS0095603Golden flower (diploid) 34.960
CNS0095604Slightly white alabastrum(tetraploid) 10.545
CNS0095605Slightly white alabastrum(tetraploid) 21.968
CNS0095606Slightly white alabastrum(tetraploid) 33.465
CNS0095607Whole white alabastrum(tetraploid) 10.413
CNS0095608Whole white alabastrum(tetraploid) 21.083
CNS0095609Whole white alabastrum(tetraploid) 31.968
CNS0095610Silvery flower (tetraploid) 17.343
CNS0095611Silvery flower (tetraploid) 27.661
CNS0095612Silvery flower (tetraploid) 313.307
CNS0095613Golden flower (tetraploid) 12.434
CNS0095614Golden flower (tetraploid) 26.220
CNS0095615Golden flower (tetraploid) 33.989
CRA001975CRR073297Stem 11.793
CRR073298Stem 20.895
CRR073299Stem 31.967
CRR073300Leaf 10.851
CRR073301Leaf 21.410
CRR073302Leaf 31.330
CRR073303Juvenile bud 12.107
CRR073304Juvenile bud 24.217
CRR073305Juvenile bud 32.859
CRR073306Third green 121.497
CRR073307Third green 214.282
CRR073308Third green 315.671
CRR073309Second white 119.766
CRR073310Second white 219.078
CRR073311Second white 317.218
CRR073312Silver flowering 116.115
CRR073313Silver flowering 215.180
CRR073314Silver flowering 311.544
CRR073315Gold flowering 11.369
CRR073316Gold flowering 21.472
CRR073317Gold flowering 31.212
CRR073318Tawny withering 10.101
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.815