Detail information of GWHGAAZE010942


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011073808.13.6032E-31PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Sesamum indicum]
Swissprottr|Q9SAC0|ZCIS_ARATH4E-2515-cis-zeta-carotene isomerase, chloroplastic (Precursor)
trEMBLtr|A0A022QYT7|A0A022QYT7_ERYGU7E-30Uncharacterized protein {ECO:0000313|EMBL:EYU32749.1}
TAIR10AT1G10830.23E-2215-cis-zeta-carotene isomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene3573066635732274-
GWHAAZE00000003mRNA3573066635732274-
GWHAAZE00000003exon3573066635730749-
GWHAAZE00000003exon3573186135732274-
GWHAAZE00000003CDS3573186135732274-
GWHAAZE00000003CDS3573066635730749-
Transcript Sequence

Network for GWHGAAZE010942

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15744Z-ISO Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.979
SRR3591706second leaf10.637
SRR3591707mature leaf7.956
SRR3591708Shoot apex7.646
SRR3591709Stem4.926
SRR3591710White floral bud96.345
SRR3591711White flower62.615
SRR3591712Green floral bud18.945
SRR3591713Yellow flower54.285
SRP173429 SRR8316895Juvenile bud stage 3.943
SRR8316896Juvenile bud stage 4.342
SRR8316897Juvenile bud stage 3.574
SRR8316894Third green stage 2.132
SRR8316900Third green stage 10.929
SRR8316901Third green stage 12.928
SRR8316898Complete white stage 26.298
SRR8316899Complete white stage 11.206
SRR8316903Complete white stage 39.470
SRR8316902Silver flowering stage41.563
SRR8316904Silver flowering stage54.716
SRR8316905Silver flowering stage33.699
SRR8316906Gold flowering stage 76.068
SRR8316907Gold flowering stage 64.889
SRR8316908Gold flowering stage 95.044
SRP132670SRR6706286Control7.651
SRR6706287Light intensity 50%8.296
SRR6706288Light intensity 20%8.411
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.733
CNS0095593Slightly white alabastrum(diploid) 23.489
CNS0095594Slightly white alabastrum(diploid) 30.776
CNS0095595Whole white alabastrum(diploid) 23.270
CNS0095596Whole white alabastrum(diploid) 33.852
CNS0095597Whole white alabastrum(diploid) 41.116
CNS0095598Silvery flower (diploied) 13.510
CNS0095599Silvery flower (diploied) 28.997
CNS0095600Silvery flower (diploied) 342.896
CNS0095601Golden flower (diploid) 16.569
CNS0095602Golden flower (diploid) 224.422
CNS0095603Golden flower (diploid) 325.126
CNS0095604Slightly white alabastrum(tetraploid) 13.631
CNS0095605Slightly white alabastrum(tetraploid) 24.943
CNS0095606Slightly white alabastrum(tetraploid) 312.293
CNS0095607Whole white alabastrum(tetraploid) 11.632
CNS0095608Whole white alabastrum(tetraploid) 24.172
CNS0095609Whole white alabastrum(tetraploid) 311.956
CNS0095610Silvery flower (tetraploid) 134.797
CNS0095611Silvery flower (tetraploid) 252.672
CNS0095612Silvery flower (tetraploid) 374.469
CNS0095613Golden flower (tetraploid) 113.662
CNS0095614Golden flower (tetraploid) 228.086
CNS0095615Golden flower (tetraploid) 326.353
CRA001975CRR073297Stem 14.843
CRR073298Stem 24.358
CRR073299Stem 36.579
CRR073300Leaf 17.077
CRR073301Leaf 27.133
CRR073302Leaf 36.086
CRR073303Juvenile bud 111.556
CRR073304Juvenile bud 212.760
CRR073305Juvenile bud 39.607
CRR073306Third green 1106.016
CRR073307Third green 270.573
CRR073308Third green 365.478
CRR073309Second white 188.479
CRR073310Second white 281.290
CRR073311Second white 393.326
CRR073312Silver flowering 175.469
CRR073313Silver flowering 277.565
CRR073314Silver flowering 359.386
CRR073315Gold flowering 110.322
CRR073316Gold flowering 210.552
CRR073317Gold flowering 310.110
CRR073318Tawny withering 13.405
CRR073319Tawny withering 20.148
CRR073320Tawny withering 33.853