Gene detail

Detail information of GWHGAAZE010975

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251899.1	2.3882E-101	PREDICTED: uncharacterized protein LOC104593637 [Nelumbo nucifera]
trEMBL	tr\|M5XTI6\|M5XTI6_PRUPE	7E-101	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22365.1}
TAIR10	AT5G07900.1	2E-41	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	37449765	37450997	-
GWHAAZE00000003	mRNA	37449765	37450997	-
GWHAAZE00000003	exon	37449765	37450997	-
GWHAAZE00000003	CDS	37449765	37450997	-

Transcript Sequence
>GWHTAAZE010987 ATGGCAAATCCCTCTCTGAAGAGATCACTATTCCTATCTTGTTTTCCCACCCAATTTCTCAGAAATATAATCACCCCACAATCCTCAACTATTTGTAGAAAACATTTGCTTAGTACAGTTTCAGATTCAGATAAATCATTGTCATCAGTGTCATCCTTCACAGTACAATACCTAATGAACACATGTGGGTTTCCGTTGGAAGATGCCCTTTCGGCTTCCAAAAAGTTGCAATTGAATGAAAACAAGTCACATGAACACCAATCTGTCTTGGAAATTTTGAGATCTTTTCATTTCTGTGATACCCACGTCACCAAACTCCTCATTAAGTGCCCCAAGATCCTTAAAATGAAGGTGAATAGTAATCTTAAGCCTAAATTAGAGTACCTCAGGGATAATGGGCTTGAGGGTCGGCTCCTCCCGGACCTAATTGTATCAAATCCCGAAATTTTGACTAAAAGCTTGAGTGGATTTGTAAAACCAAGATTGGAATTCCTGAAGAAATATTTACACACCAATGACAGAGTTTTCGGTGCTGTTAAACGTACTTTTGGGCTTTGGAGAATTAATTTGAACGGAATTACGGAGCGGAATATTGAGTTGTTGTTAAGTGAAGGGGTGACTACTAGAAGTATAGAGAGATGGGTTTTCTGGCAGCCGAGAACTTTGATGCACAGGGTTGATAGAATTGTCTATGCGATTCGGACTGTCAAAGAGTTGGGGCTCGACCCTAGTTCTTTTAGATGTGTACTAGCTATTCAAGTGTTGCTCTCAATCAGCCATTCAACATGGAATCAGAAAGTGCAAAATTTTAAGACATTAGGATGGTCTGAGGAAATGATCTGGTCCGCATTTAAGCGGTATTCAATGTGTTTCGGTTTGTCTGAGGAGAATGTCAGGAGGACAATGGATTTTTATGTGAACACGATGAAATTGAAGCTGGAGGTTATAGCAGCTCAACCTAGTCTTCTTGCATACGCAATGAATACAAGAATTCGCCCACGGTATAGTGTTATAAAGGTTTTGGAGTGTCGGAAGCTGCTTAAGAAGAAATTTAAGGTTTGTTGGGTATTTAGACTGACTGAAAAGGCTTTCTTGGAAAAATTTATGGAAAAGCATTTGGACCAAATTCCAAACTTGTTGGAGGTATATCGTGGTACTATCGCGGTTGAGAAGATGGATCAATTAGAACAAAGTGAGTTAACCTCCTATGTGGAGATATGTGCAGTACAATGA

Network for GWHGAAZE010975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	73	173	4.40E-10
PF02536.15	mTERF	90	225	1.10E-11
PF02536.15	mTERF	195	365	2.20E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.634
	SRR3591706	second leaf	2.625
	SRR3591707	mature leaf	3.400
	SRR3591708	Shoot apex	3.375
	SRR3591709	Stem	3.524
	SRR3591710	White floral bud	3.628
	SRR3591711	White flower	4.714
	SRR3591712	Green floral bud	5.245
	SRR3591713	Yellow flower	2.645
SRP173429	SRR8316895	Juvenile bud stage	1.415
	SRR8316896	Juvenile bud stage	1.277
	SRR8316897	Juvenile bud stage	0.672
	SRR8316894	Third green stage	0.828
	SRR8316900	Third green stage	2.316
	SRR8316901	Third green stage	2.804
	SRR8316898	Complete white stage	0.603
	SRR8316899	Complete white stage	3.278
	SRR8316903	Complete white stage	1.614
	SRR8316902	Silver flowering stage	0.814
	SRR8316904	Silver flowering stage	1.362
	SRR8316905	Silver flowering stage	0.350
	SRR8316906	Gold flowering stage	1.710
	SRR8316907	Gold flowering stage	0.779
	SRR8316908	Gold flowering stage	1.024
SRP132670	SRR6706286	Control	1.407
	SRR6706287	Light intensity 50%	1.368
	SRR6706288	Light intensity 20%	1.582
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.842
	CNS0095593	Slightly white alabastrum(diploid) 2	2.213
	CNS0095594	Slightly white alabastrum(diploid) 3	2.062
	CNS0095595	Whole white alabastrum(diploid) 2	1.933
	CNS0095596	Whole white alabastrum(diploid) 3	1.286
	CNS0095597	Whole white alabastrum(diploid) 4	1.534
	CNS0095598	Silvery flower (diploied) 1	1.572
	CNS0095599	Silvery flower (diploied) 2	1.820
	CNS0095600	Silvery flower (diploied) 3	2.251
	CNS0095601	Golden flower (diploid) 1	2.247
	CNS0095602	Golden flower (diploid) 2	2.189
	CNS0095603	Golden flower (diploid) 3	1.795
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.035
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.050
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.035
	CNS0095610	Silvery flower (tetraploid) 1	0.014
	CNS0095611	Silvery flower (tetraploid) 2	0.009
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.071
	CNS0095614	Golden flower (tetraploid) 2	0.016
	CNS0095615	Golden flower (tetraploid) 3	0.034
CRA001975	CRR073297	Stem 1	1.142
	CRR073298	Stem 2	0.549
	CRR073299	Stem 3	0.313
	CRR073300	Leaf 1	1.074
	CRR073301	Leaf 2	0.790
	CRR073302	Leaf 3	0.773
	CRR073303	Juvenile bud 1	0.442
	CRR073304	Juvenile bud 2	0.376
	CRR073305	Juvenile bud 3	0.349
	CRR073306	Third green 1	0.585
	CRR073307	Third green 2	0.494
	CRR073308	Third green 3	0.657
	CRR073309	Second white 1	1.075
	CRR073310	Second white 2	0.588
	CRR073311	Second white 3	0.729
	CRR073312	Silver flowering 1	0.113
	CRR073313	Silver flowering 2	0.145
	CRR073314	Silver flowering 3	0.142
	CRR073315	Gold flowering 1	1.264
	CRR073316	Gold flowering 2	0.969
	CRR073317	Gold flowering 3	0.932
	CRR073318	Tawny withering 1	0.462
	CRR073319	Tawny withering 2	0.598
	CRR073320	Tawny withering 3	0.533