Detail information of GWHGAAZE010985


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIU50085.11.3926E-15315-cis-zeta-carotene isomerase, partial [Lactuca sativa]
Swissprottr|Q9SAC0|ZCIS_ARATH3E-14215-cis-zeta-carotene isomerase, chloroplastic (Precursor)
trEMBLtr|A0A097PPW4|A0A097PPW4_LACSA5E-15415-cis-zeta-carotene isomerase {ECO:0000313|EMBL:AIU50085.1} (Fragment)
TAIR10AT1G10830.15E-11415-cis-zeta-carotene isomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene3762310537624999-
GWHAAZE00000003mRNA3762310537624999-
GWHAAZE00000003exon3762310537623440-
GWHAAZE00000003exon3762407237624281-
GWHAAZE00000003exon3762485937624999-
GWHAAZE00000003CDS3762485937624999-
GWHAAZE00000003CDS3762407237624281-
GWHAAZE00000003CDS3762310537623440-
Transcript Sequence

Network for GWHGAAZE010985

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07298.12NnrU12191.30E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15744Z-ISO Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.819
SRR3591706second leaf13.482
SRR3591707mature leaf11.359
SRR3591708Shoot apex8.239
SRR3591709Stem7.637
SRR3591710White floral bud67.253
SRR3591711White flower54.195
SRR3591712Green floral bud13.371
SRR3591713Yellow flower39.014
SRP173429 SRR8316895Juvenile bud stage 8.525
SRR8316896Juvenile bud stage 12.741
SRR8316897Juvenile bud stage 3.239
SRR8316894Third green stage 3.894
SRR8316900Third green stage 24.570
SRR8316901Third green stage 19.544
SRR8316898Complete white stage 34.016
SRR8316899Complete white stage 31.602
SRR8316903Complete white stage 53.133
SRR8316902Silver flowering stage55.687
SRR8316904Silver flowering stage68.317
SRR8316905Silver flowering stage42.116
SRR8316906Gold flowering stage 137.805
SRR8316907Gold flowering stage 127.291
SRR8316908Gold flowering stage 112.217
SRP132670SRR6706286Control20.699
SRR6706287Light intensity 50%24.969
SRR6706288Light intensity 20%20.079
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.508
CNS0095593Slightly white alabastrum(diploid) 212.391
CNS0095594Slightly white alabastrum(diploid) 36.335
CNS0095595Whole white alabastrum(diploid) 210.455
CNS0095596Whole white alabastrum(diploid) 310.673
CNS0095597Whole white alabastrum(diploid) 410.309
CNS0095598Silvery flower (diploied) 112.463
CNS0095599Silvery flower (diploied) 222.169
CNS0095600Silvery flower (diploied) 371.677
CNS0095601Golden flower (diploid) 119.284
CNS0095602Golden flower (diploid) 235.770
CNS0095603Golden flower (diploid) 343.222
CNS0095604Slightly white alabastrum(tetraploid) 16.723
CNS0095605Slightly white alabastrum(tetraploid) 23.637
CNS0095606Slightly white alabastrum(tetraploid) 39.849
CNS0095607Whole white alabastrum(tetraploid) 13.044
CNS0095608Whole white alabastrum(tetraploid) 25.651
CNS0095609Whole white alabastrum(tetraploid) 38.033
CNS0095610Silvery flower (tetraploid) 129.947
CNS0095611Silvery flower (tetraploid) 240.397
CNS0095612Silvery flower (tetraploid) 370.015
CNS0095613Golden flower (tetraploid) 120.322
CNS0095614Golden flower (tetraploid) 228.475
CNS0095615Golden flower (tetraploid) 326.372
CRA001975CRR073297Stem 117.148
CRR073298Stem 214.883
CRR073299Stem 318.751
CRR073300Leaf 121.705
CRR073301Leaf 220.285
CRR073302Leaf 325.130
CRR073303Juvenile bud 140.185
CRR073304Juvenile bud 244.035
CRR073305Juvenile bud 330.277
CRR073306Third green 1235.099
CRR073307Third green 2167.597
CRR073308Third green 3162.405
CRR073309Second white 1226.527
CRR073310Second white 2188.140
CRR073311Second white 3201.668
CRR073312Silver flowering 1178.117
CRR073313Silver flowering 2161.344
CRR073314Silver flowering 3145.384
CRR073315Gold flowering 128.816
CRR073316Gold flowering 232.558
CRR073317Gold flowering 331.439
CRR073318Tawny withering 19.444
CRR073319Tawny withering 210.547
CRR073320Tawny withering 38.566