Gene detail

Detail information of GWHGAAZE011047

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11128.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UU35\|A0A068UU35_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_52 {ECO:0000313\|EMBL:CDP11128.1}
TAIR10	AT2G32760.1	5E-99	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	40428832	40437287	+
GWHAAZE00000003	mRNA	40428832	40437287	+
GWHAAZE00000003	exon	40428832	40429032	+
GWHAAZE00000003	exon	40429481	40429687	+
GWHAAZE00000003	exon	40431567	40431747	+
GWHAAZE00000003	exon	40433844	40433849	+
GWHAAZE00000003	exon	40434382	40434533	+
GWHAAZE00000003	exon	40434837	40435064	+
GWHAAZE00000003	exon	40437171	40437287	+
GWHAAZE00000003	CDS	40428832	40429032	+
GWHAAZE00000003	CDS	40429481	40429687	+
GWHAAZE00000003	CDS	40431567	40431747	+
GWHAAZE00000003	CDS	40433844	40433849	+
GWHAAZE00000003	CDS	40434382	40434533	+
GWHAAZE00000003	CDS	40434837	40435064	+
GWHAAZE00000003	CDS	40437171	40437287	+

Transcript Sequence
>GWHTAAZE011059 ATGGAACAAAAGAAAATTCTCTCATCATCATCGTCGAAGAAGGGGGGTGTTGTTGGAGAAGAAAATAAAGAGAAAGTGAAGGTGATACAATGGGAAGATTTCGAGCAAGAGCTTGCTCGTCTATGGAGTCTTTCTTCTGCCCTAAATGAAGCTAAGCATAAGAAGCTTTTGCTCCAAAACAAGCTTCAAGCCGCCCTACAGGTAGAAGAAGAATCTTTAAGTCGGTCCAATGAACTTGATGAGATGCGGGAGAAATTGGAGTTCCGGAAATTGGTGATGGGAAACATGTCAATGCATTCGAAGGTTCTAGAAGAGAAAGTCAAAAAGCAAGAGGAGCAACTTAGCACTGAAATTAGATCTCTGTTGGTTGCAGGCACTGCTCTTTCTGTAGCTAGTAAGCGTTTGCAGGAAGCAAACAGGTCACTTGCTGGAGAAAGGGGTTATGGTCACCTAAAAAACTTACAGAAGTTGTTGAGAATGAGGCAAAGATATATGGTATCACAAGTTTCACTGCTCTATCCTGTCAAGGTTGTTCTTGGACAGGCACGTGAACAAGAACTTGAATCATATACCAGCAGTAGCAGATCAGGTGCAGGGATCGCTTCTGGATCGAAACCTCTTGATCAAGAAGGATCATTGACTATATTAGGTCTGCATCTCAGTATGCTCCCTTTTACAAAGACGAGTTTTTTCACTGATAAAAAAGAGGTCCAGAGATCTGCAACTGCCCTGGGATATGTTGCACATGCTGTTCCCCTTATTGCTTCCTATTTAGAGGTTCCTTTGCGTTACCCTTTAAGATTGGGAGGATCTCGATCATATATTTGCGACTATGCTCCTTCCGTTGAGCATACATCCACTGATGTATCAAATTCATCATCACAACCCACAAGTTTGAAGCCTGTAGAATTTCCTCTGTTTTTGGAAGGGCAAGACACAACAAGAGCAGCTTATGCTGTATTCTTGCTAAATAAGGATTTAGAGCAGCTTTTGAATTTCATTGGTGTTAAGAGTTTAGGGCCACGCCATATTCTGGCTAATTTCAAGGAGCTTCTCAGGACCATCCTGTCTCCAGAGTATATTGATACATGA

Network for GWHGAAZE011047

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21249	UVRAG	Autophagy - animal	map04140

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.595
	SRR3591706	second leaf	2.169
	SRR3591707	mature leaf	1.679
	SRR3591708	Shoot apex	3.435
	SRR3591709	Stem	4.094
	SRR3591710	White floral bud	4.119
	SRR3591711	White flower	4.266
	SRR3591712	Green floral bud	4.945
	SRR3591713	Yellow flower	4.439
SRP173429	SRR8316895	Juvenile bud stage	2.203
	SRR8316896	Juvenile bud stage	4.612
	SRR8316897	Juvenile bud stage	1.613
	SRR8316894	Third green stage	2.128
	SRR8316900	Third green stage	3.226
	SRR8316901	Third green stage	3.853
	SRR8316898	Complete white stage	1.656
	SRR8316899	Complete white stage	6.194
	SRR8316903	Complete white stage	2.500
	SRR8316902	Silver flowering stage	1.510
	SRR8316904	Silver flowering stage	3.493
	SRR8316905	Silver flowering stage	0.999
	SRR8316906	Gold flowering stage	3.562
	SRR8316907	Gold flowering stage	5.629
	SRR8316908	Gold flowering stage	4.543
SRP132670	SRR6706286	Control	1.897
	SRR6706287	Light intensity 50%	1.867
	SRR6706288	Light intensity 20%	1.918
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.242
	CNS0095593	Slightly white alabastrum(diploid) 2	2.773
	CNS0095594	Slightly white alabastrum(diploid) 3	2.640
	CNS0095595	Whole white alabastrum(diploid) 2	2.344
	CNS0095596	Whole white alabastrum(diploid) 3	1.850
	CNS0095597	Whole white alabastrum(diploid) 4	1.740
	CNS0095598	Silvery flower (diploied) 1	3.096
	CNS0095599	Silvery flower (diploied) 2	1.417
	CNS0095600	Silvery flower (diploied) 3	3.632
	CNS0095601	Golden flower (diploid) 1	2.155
	CNS0095602	Golden flower (diploid) 2	3.328
	CNS0095603	Golden flower (diploid) 3	4.726
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.743
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.180
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.166
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.524
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.901
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.975
	CNS0095610	Silvery flower (tetraploid) 1	3.552
	CNS0095611	Silvery flower (tetraploid) 2	2.042
	CNS0095612	Silvery flower (tetraploid) 3	3.006
	CNS0095613	Golden flower (tetraploid) 1	3.306
	CNS0095614	Golden flower (tetraploid) 2	3.411
	CNS0095615	Golden flower (tetraploid) 3	3.136
CRA001975	CRR073297	Stem 1	3.682
	CRR073298	Stem 2	3.582
	CRR073299	Stem 3	3.405
	CRR073300	Leaf 1	2.306
	CRR073301	Leaf 2	3.307
	CRR073302	Leaf 3	2.940
	CRR073303	Juvenile bud 1	2.670
	CRR073304	Juvenile bud 2	1.920
	CRR073305	Juvenile bud 3	3.407
	CRR073306	Third green 1	2.353
	CRR073307	Third green 2	2.424
	CRR073308	Third green 3	1.800
	CRR073309	Second white 1	3.001
	CRR073310	Second white 2	3.644
	CRR073311	Second white 3	2.202
	CRR073312	Silver flowering 1	2.743
	CRR073313	Silver flowering 2	1.306
	CRR073314	Silver flowering 3	3.517
	CRR073315	Gold flowering 1	1.380
	CRR073316	Gold flowering 2	2.842
	CRR073317	Gold flowering 3	2.381
	CRR073318	Tawny withering 1	4.232
	CRR073319	Tawny withering 2	3.455
	CRR073320	Tawny withering 3	2.563