Gene detail

Detail information of GWHGAAZE011055

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11128.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UU35\|A0A068UU35_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_52 {ECO:0000313\|EMBL:CDP11128.1}
TAIR10	AT2G32760.1	1E-99	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	40768531	40777009	-
GWHAAZE00000003	mRNA	40768531	40777009	-
GWHAAZE00000003	exon	40776809	40777009	-
GWHAAZE00000003	exon	40776155	40776361	-
GWHAAZE00000003	exon	40774058	40774274	-
GWHAAZE00000003	exon	40771303	40771454	-
GWHAAZE00000003	exon	40770766	40770996	-
GWHAAZE00000003	exon	40768531	40768647	-
GWHAAZE00000003	CDS	40776809	40777009	-
GWHAAZE00000003	CDS	40776155	40776361	-
GWHAAZE00000003	CDS	40774058	40774274	-
GWHAAZE00000003	CDS	40771303	40771454	-
GWHAAZE00000003	CDS	40770766	40770996	-
GWHAAZE00000003	CDS	40768531	40768647	-

Transcript Sequence
>GWHTAAZE011067 ATGGAACAAAAGAAAATTCTCTCATCATCATCGTCGAAGAAGGGGGGTGTTGTTGGAGAAGAAAATAAAGAGAAAGTGAAGGTGATACAATGGGAAGATTTCGAGCAAGAGCTTGCTCGTCTATGGAGTCTTTCTTCTGCCCTAAATGAAGCTAAGCATAAGAAGCTTTTGCTCCAAAACAAGCTTCAAGCCGCCCTACAGGTAGAAGAAGAATCTTTAAGTCGGTCCAATGAACTTGATGAGATGCGGGAGAAATTGGAGTCCCGGAAATTGGTGATGGGAAACATGTCAATGCATTCGAAGGTTCTAGAAGAGAAAGTCAAAAAGCAAGAGGAGCAACTTAGCACTGAAATTAGATCTCTGTTGGTTGCAGGCACTGCTCTTTCTGTAGCTAGTAAGCGTTTGCAGGAAGCAAACAGGTCACTTGCTGGAGAAAGGGGTTATGGTCACCTAAAAAACTTACAGAAGTTGTTGAGAATGAGGCAAAGATATATGGTATCACAAGTTTCACTGCTCTATCCTGTCAAGGTTGTTCTTGGACAGGCACGTGAACAAGAACTTGAATCATATACCAGCAGTAGCAGATCAGGTAATATGTTTGTGAATAGTAATCTTATGAGTTATGGGATCGCTTCTGGATCGAAACCTCTTGATCAAGAAGGATCATTGACTATATTAGGTCTGCATCTCAGTATGCTCCCTTTTACAAAGACGAGTTTTTTCACTGATAAAAAAGAGGTCCAGAGATCTGCAACTGCCCTGGGATATGTTGCACATGCTGTTCCCCTTATTGCTTCCTATTTAGAGGTTCCTTTGCGTTACCCTTTAAGATTGGGAGGATCTCGATCATATATTTGCGACTATGCTCCTTCCGTTGAGCATACATCCACTGATGTGGCGTCAAATTCATCATCACAACCCACAAGTTTGAAGCCTGTAGAATTTCCTCTGTTTTTGGAAGGGCAAGACACAACAAGAGCAGCTTATGCTGTATTCTTGCTAAATAAGGATTTAGAGCAGCTTTTGAATTTCATTGGTGTTAAGAGTTTAGGGCCACGCCATATTCTGGCTAATTTCAAGGAGCTTCTCAGGACCATCCTGTCTCCAGAGTATATTGATACATGA

Network for GWHGAAZE011055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21249	UVRAG	Autophagy - animal	map04140

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.175
	SRR3591706	second leaf	3.321
	SRR3591707	mature leaf	6.141
	SRR3591708	Shoot apex	6.128
	SRR3591709	Stem	7.920
	SRR3591710	White floral bud	5.287
	SRR3591711	White flower	9.051
	SRR3591712	Green floral bud	8.125
	SRR3591713	Yellow flower	8.235
SRP173429	SRR8316895	Juvenile bud stage	6.003
	SRR8316896	Juvenile bud stage	5.983
	SRR8316897	Juvenile bud stage	1.413
	SRR8316894	Third green stage	4.321
	SRR8316900	Third green stage	7.137
	SRR8316901	Third green stage	7.379
	SRR8316898	Complete white stage	3.499
	SRR8316899	Complete white stage	10.357
	SRR8316903	Complete white stage	6.478
	SRR8316902	Silver flowering stage	3.840
	SRR8316904	Silver flowering stage	5.629
	SRR8316905	Silver flowering stage	3.025
	SRR8316906	Gold flowering stage	8.811
	SRR8316907	Gold flowering stage	9.501
	SRR8316908	Gold flowering stage	9.145
SRP132670	SRR6706286	Control	2.037
	SRR6706287	Light intensity 50%	3.497
	SRR6706288	Light intensity 20%	3.276
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.796
	CNS0095593	Slightly white alabastrum(diploid) 2	6.888
	CNS0095594	Slightly white alabastrum(diploid) 3	6.803
	CNS0095595	Whole white alabastrum(diploid) 2	4.984
	CNS0095596	Whole white alabastrum(diploid) 3	5.230
	CNS0095597	Whole white alabastrum(diploid) 4	3.657
	CNS0095598	Silvery flower (diploied) 1	4.607
	CNS0095599	Silvery flower (diploied) 2	3.744
	CNS0095600	Silvery flower (diploied) 3	8.024
	CNS0095601	Golden flower (diploid) 1	5.533
	CNS0095602	Golden flower (diploid) 2	7.907
	CNS0095603	Golden flower (diploid) 3	6.849
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.947
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.966
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.810
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.241
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.572
	CNS0095610	Silvery flower (tetraploid) 1	6.432
	CNS0095611	Silvery flower (tetraploid) 2	6.801
	CNS0095612	Silvery flower (tetraploid) 3	6.004
	CNS0095613	Golden flower (tetraploid) 1	5.077
	CNS0095614	Golden flower (tetraploid) 2	5.018
	CNS0095615	Golden flower (tetraploid) 3	8.005
CRA001975	CRR073297	Stem 1	7.263
	CRR073298	Stem 2	7.010
	CRR073299	Stem 3	5.779
	CRR073300	Leaf 1	6.060
	CRR073301	Leaf 2	3.812
	CRR073302	Leaf 3	5.194
	CRR073303	Juvenile bud 1	5.177
	CRR073304	Juvenile bud 2	5.966
	CRR073305	Juvenile bud 3	5.022
	CRR073306	Third green 1	6.001
	CRR073307	Third green 2	5.218
	CRR073308	Third green 3	3.071
	CRR073309	Second white 1	2.525
	CRR073310	Second white 2	4.391
	CRR073311	Second white 3	5.592
	CRR073312	Silver flowering 1	5.707
	CRR073313	Silver flowering 2	3.390
	CRR073314	Silver flowering 3	4.821
	CRR073315	Gold flowering 1	3.459
	CRR073316	Gold flowering 2	4.153
	CRR073317	Gold flowering 3	3.378
	CRR073318	Tawny withering 1	4.850
	CRR073319	Tawny withering 2	4.778
	CRR073320	Tawny withering 3	5.841