Gene detail

Detail information of GWHGAAZE011091

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002270542.1	PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 homolog A [Vitis vinifera]
Swissprot	tr\|O48844\|PSD1A_ARATH	26S proteasome non-ATPase regulatory subunit 1 homolog A
trEMBL	tr\|D7TEW7\|D7TEW7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29040.3}
TAIR10	AT2G32730.1	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	42171964	42182516	+
GWHAAZE00000003	mRNA	42171964	42182516	+
GWHAAZE00000003	exon	42171964	42172145	+
GWHAAZE00000003	exon	42174796	42174859	+
GWHAAZE00000003	exon	42175722	42175827	+
GWHAAZE00000003	exon	42176337	42176451	+
GWHAAZE00000003	exon	42176526	42176694	+
GWHAAZE00000003	exon	42177049	42177536	+
GWHAAZE00000003	exon	42177639	42177774	+
GWHAAZE00000003	exon	42178279	42178527	+
GWHAAZE00000003	exon	42178610	42178830	+
GWHAAZE00000003	exon	42178925	42179183	+
GWHAAZE00000003	exon	42180074	42180306	+
GWHAAZE00000003	exon	42180784	42181309	+
GWHAAZE00000003	exon	42182184	42182516	+
GWHAAZE00000003	CDS	42171964	42172145	+
GWHAAZE00000003	CDS	42174796	42174859	+
GWHAAZE00000003	CDS	42175722	42175827	+
GWHAAZE00000003	CDS	42176337	42176451	+
GWHAAZE00000003	CDS	42176526	42176694	+
GWHAAZE00000003	CDS	42177049	42177536	+
GWHAAZE00000003	CDS	42177639	42177774	+
GWHAAZE00000003	CDS	42178279	42178527	+
GWHAAZE00000003	CDS	42178610	42178830	+
GWHAAZE00000003	CDS	42178925	42179183	+
GWHAAZE00000003	CDS	42180074	42180306	+
GWHAAZE00000003	CDS	42180784	42181309	+
GWHAAZE00000003	CDS	42182184	42182516	+

Transcript Sequence
>GWHTAAZE011103 ATGGCGGCGACTATGGTGAGCTCAGCCGGAGGGCTTTTGGCTATGCTCAACGAGCCTCATCCATCGCTAAAACTCCACGCTCTTACCAATCTAAACGCCTTTGTTGATTACTTCTGGCCGGAGATCTCCACTAGTGTCCCCATTATGTATGCAATTTCTCTCTATCTACGCTCTATCCATGTAGAGAGCTTGTATGAGGACGAAGAGTTTGACCAGAGACAATTGGCGGCATTACTTGTGTCAAAGGTGTTCTACTACTTGGGCGAACTTAATGATTCTTTGTCATATGCTCTAGGAGCTGGTCCTTTGTTTGATGTTTCAGAAGATTCAGATTATGTTCATACTCTTCTCGCCAAAGCTATAGATGAGTATGCCAGTCTTAGGACTAAGGCAGCGGAGTCTAATGATGAAGCAGCAGCCAATATTGATCCTAGGTTGGAGGCAATTGTCGAGAGGATGCTTGACAAGTGTATCTTGGATGGAAGATATCAGCAAGCAATTGGAATGGCAATTGAATGCCGAAGATTGGATAAGCTTGAGGAAGGAATTACAAAGAGTGATAATGTTCATGCAACTCTATCGTACTGCCTTAACGTCTCTCATGCTTTTGTTAACCGTAGAGAATATCGACGGGAGGTGCTTCAACTTCTCGTTAAAGTATTTCAGAAGCTGCCTTCGCCCGATTATTTGAGTATTTGTCAGTGCCTCATGTTTTTGGATGAACCAGAGGGTGTTGCAAACATATTGGAAAAGCTTCTACGTTCAGAAAATAAAGATGATGCTTTGCTAGCTCTACAAATAGCTTTTGATCTCATAGAGAACGAGCACCAAGCTTTTCTTTTGAACGTTAGAGATCGGCTCTCCAAACCCAAATCTCAACCTACAGAATCTGAACGGCTAGGATCTGCCGAGCCAGATTCTGCTCAAACTCAAAATGCTAATGCCACTCCATCAGAGGATGTTCAAATGACAGATGGCCCTACTCAAGCCGTTGATGTGAATATTGTTCCTGAAGTCGATCCAAAGGAAGTAACATATGCTGAGAGGTTGACAAAACTCAAAGGAATTTTGTCTGGGGAGACTTCAATCCAGTTAACTCTACAATTCTTATATAGTCATAACAAGTCGGATCTTCTTATTCTGAAGACCATAAAGCAGTCGGTTGAGATGAGAAACAGTGTTTGCCACAGTGCAACAATATATGCCAATGCAATCATGCATGCTGGAACAACTGTGGATACATTTCTAAGGGAGAATCTGGACTGGCTAAGCAGGGCCACAAATTGGGCCAAGTTTAGTGCAACAGCTGGGCTAGGTGTTATCCACAGAGGCCACTTGCAGCAAGGAAGATCACTAATGGCCCCTTATTTGCCTCAAAGCGGTGCTGGTGGTGGGGGCAGCCCATACTCAGAAGGTGGTGCTCTCTATGCCTTGGGTCTTATTCATGCAAACCACGGGGAGGGCATCAAACAATTTCTTCGTGATAGCCTACGAAGTACCAATGTTGAGGTTATTCAACATGGTGCATGCTTAGGTCTTGGTTTGGCTGCTCTGGGAACAGCTGATGAAGATATATATGATGACATAAAAACTGTTCTTTATACGGACAGTGCTGTTGCCGGTGAAGCTGCTGGTATTAGTATGGGTTTATTAATGGTTGGTACTGCAAGTGAGAAGGCAGGGGAAATGCTTACATATGCACATGAAACACAACACGAGAAGATTATTAGGGGACTGGCGTTGGGGATAGCCCTTACTGTCTATGGAAGAGAAGAAGAAGCCGATACATTGATTGAGCAGATGACTAGGGATCAAGACCCCATACTACGATATGGTGGTATGTATGCGTTGGCATTGGCATACAGTGGAACAGCAAACAACAAGGCCATCCGTCAGTTGCTACACTTCGCTGTTTCTGATGTCAGTGATGATGTCAGGAGGACTGCTGTTCTGGCCCTTGGTTTTGTCTTGTACTCTGAACCAGAACAGACCCCTCGAATTGTCTCCCTGCTCTCTGAGTCGTACAACCCACATGTTCGCTATGGAGCAGCTTTGGCAGTAGGCATTTCCTGTGCAGGTACTGGTCTTAGTGAGGCCATATCTTTGCTAGAACCTTTGACCTCAGATGTTGTTGACTTTGTACGACAAGGTGCTCTCATTGCAATGGCTATGGTCATGGTCCAGATCAGCGAAGCCAGTGATTCTCGTGTTGGATCGTTCAGGCGACAACTGGAGAAAATAATTCAAGATAAGCATGAAGACACAATGAGCAAGATGGGGGCAATTTTAGCCTCTGGAATCCTCGATGCCGGGGGAAGGAATGTCACAATTAAGTTGCTATCGAAGACAAAACATGACAAGATAACTGCAGTCGTTGGCCTTGCGGTATTCAGCCAATTTTGGTACTGGTACCCCCTCATATATTTCATTAGCTTGGCGTTCTCGCCCACTGCTTTCATAGGACTCAATTATGATTTAAAAGTACCAAAGTTTGAGTTCTTGTCACATGCAAAACCGTCTTTGTTTGAGTACCCTCGTCCTACTACCGTGCCCACCACCACATCAGCTGTGAAACTCCCTACTGCGGTTTTATCAACGTCGGCCAAAGCTAAGGCTAGGGCTAGTAAGAAAGAGGCGGATCAAAAGGCCGTTGCTGAAAAGTCTACTTCTGGGTCAGATGAACCTGCTGGGTCAAGTTCTGCGAAAGGGAAGTCGTCTAGTGACAAGGATGCTGCGGATTCTATGCAGGTTGATACTCCCACGGAGAAGAAGGCAGAACCTGAGCCCACTTTCGAGATTTTGACCAACCCTGCCCGGGTGGTCCCCGCCCAAGAGAAATTCATCAAGTTTTTGGAAGAAAGCAGGTACGTGCCTGTGAAATCAGCAGCTTCGGGCTTCGTGCTCTTAAGGGACTTGCGTCCTACAGAACCGGAGGTTTTGTCTCTCACGGATGCACCTTCATCAACTGCATCAACCGCTGCAGCACCTGCAGCTGCACATCAGGGCGGCTCATCGTCGGGCGCCACGATGAACGTAGACGAGGAACCTCAGCCACCGCAGCCCTTTGAATACAGCAATTGA

Network for GWHGAAZE011091

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01851.23	PC_rep	508	541	5.40E-06
PF13646.7	HEAT_2	631	723	9.90E-13
PF18004.2	RPN2_C	817	979	2.20E-48

Protein Sequence

>GWHPAAZE011097
MAATMVSSAGGLLAMLNEPHPSLKLHALTNLNAFVDYFWPEISTSVPIMYAISLYLRSIHVESLYEDEEFDQRQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLRTKAAESNDEAAANIDPRLEAIVERMLDKCILDGRYQQAIGMAIECRRLDKLEEGITKSDNVHATLSYCLNVSHAFVNRREYRREVLQLLVKVFQKLPSPDYLSICQCLMFLDEPEGVANILEKLLRSENKDDALLALQIAFDLIENEHQAFLLNVRDRLSKPKSQPTESERLGSAEPDSAQTQNANATPSEDVQMTDGPTQAVDVNIVPEVDPKEVTYAERLTKLKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQSGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKTVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDSRVGSFRRQLEKIIQDKHEDTMSKMGAILASGILDAGGRNVTIKLLSKTKHDKITAVVGLAVFSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFLSHAKPSLFEYPRPTTVPTTTSAVKLPTAVLSTSAKAKARASKKEADQKAVAEKSTSGSDEPAGSSSAKGKSSSDKDAADSMQVDTPTEKKAEPEPTFEILTNPARVVPAQEKFIKFLEESRYVPVKSAASGFVLLRDLRPTEPEVLSLTDAPSSTASTAAAPAAAHQGGSSSGATMNVDEEPQPPQPFEYSN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03032	PSMD1, RPN2	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0042176	biological_process	regulation of protein catabolic process
GO:0000502	cellular_component	proteasome complex
GO:0030234	molecular_function	enzyme regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	111.724
	SRR3591706	second leaf	52.148
	SRR3591707	mature leaf	37.720
	SRR3591708	Shoot apex	92.322
	SRR3591709	Stem	72.505
	SRR3591710	White floral bud	106.003
	SRR3591711	White flower	133.013
	SRR3591712	Green floral bud	75.274
	SRR3591713	Yellow flower	84.929
SRP173429	SRR8316895	Juvenile bud stage	56.386
	SRR8316896	Juvenile bud stage	77.150
	SRR8316897	Juvenile bud stage	34.599
	SRR8316894	Third green stage	36.816
	SRR8316900	Third green stage	100.435
	SRR8316901	Third green stage	92.109
	SRR8316898	Complete white stage	44.453
	SRR8316899	Complete white stage	110.211
	SRR8316903	Complete white stage	82.538
	SRR8316902	Silver flowering stage	57.623
	SRR8316904	Silver flowering stage	81.635
	SRR8316905	Silver flowering stage	35.005
	SRR8316906	Gold flowering stage	137.024
	SRR8316907	Gold flowering stage	140.015
	SRR8316908	Gold flowering stage	141.385
SRP132670	SRR6706286	Control	88.992
	SRR6706287	Light intensity 50%	94.081
	SRR6706288	Light intensity 20%	97.857
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.075
	CNS0095593	Slightly white alabastrum(diploid) 2	50.795
	CNS0095594	Slightly white alabastrum(diploid) 3	38.070
	CNS0095595	Whole white alabastrum(diploid) 2	43.297
	CNS0095596	Whole white alabastrum(diploid) 3	39.466
	CNS0095597	Whole white alabastrum(diploid) 4	36.795
	CNS0095598	Silvery flower (diploied) 1	50.323
	CNS0095599	Silvery flower (diploied) 2	47.970
	CNS0095600	Silvery flower (diploied) 3	134.971
	CNS0095601	Golden flower (diploid) 1	40.080
	CNS0095602	Golden flower (diploid) 2	115.296
	CNS0095603	Golden flower (diploid) 3	112.959
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.093
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.743
	CNS0095606	Slightly white alabastrum(tetraploid) 3	125.072
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.612
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.999
	CNS0095610	Silvery flower (tetraploid) 1	113.354
	CNS0095611	Silvery flower (tetraploid) 2	113.339
	CNS0095612	Silvery flower (tetraploid) 3	113.470
	CNS0095613	Golden flower (tetraploid) 1	48.640
	CNS0095614	Golden flower (tetraploid) 2	84.965
	CNS0095615	Golden flower (tetraploid) 3	116.069
CRA001975	CRR073297	Stem 1	103.113
	CRR073298	Stem 2	98.618
	CRR073299	Stem 3	112.678
	CRR073300	Leaf 1	131.494
	CRR073301	Leaf 2	110.602
	CRR073302	Leaf 3	103.865
	CRR073303	Juvenile bud 1	117.203
	CRR073304	Juvenile bud 2	112.986
	CRR073305	Juvenile bud 3	143.431
	CRR073306	Third green 1	90.561
	CRR073307	Third green 2	65.348
	CRR073308	Third green 3	88.620
	CRR073309	Second white 1	127.959
	CRR073310	Second white 2	119.347
	CRR073311	Second white 3	119.792
	CRR073312	Silver flowering 1	93.585
	CRR073313	Silver flowering 2	108.940
	CRR073314	Silver flowering 3	90.718
	CRR073315	Gold flowering 1	47.584
	CRR073316	Gold flowering 2	69.263
	CRR073317	Gold flowering 3	63.369
	CRR073318	Tawny withering 1	85.586
	CRR073319	Tawny withering 2	63.259
	CRR073320	Tawny withering 3	82.839