Gene detail

Detail information of GWHGAAZE011184

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278590.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5AGK9\|A5AGK9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68996.1}
TAIR10	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	51246963	51250350	+
GWHAAZE00000003	mRNA	51246963	51250350	+
GWHAAZE00000003	exon	51246963	51249080	+
GWHAAZE00000003	exon	51249155	51249361	+
GWHAAZE00000003	exon	51249501	51249774	+
GWHAAZE00000003	exon	51250046	51250350	+
GWHAAZE00000003	CDS	51246963	51249080	+
GWHAAZE00000003	CDS	51249155	51249361	+
GWHAAZE00000003	CDS	51249501	51249774	+
GWHAAZE00000003	CDS	51250046	51250350	+

Transcript Sequence
>GWHTAAZE011196 ATGGCTTTTCGAAATTCTCTCTCCTTTCTATCATTATCTCTAGCCTTGTCTTTTGTAATATTTTCTTCACCCAATTTTGCTTCTGCCTCAATTGAAGAAGCAAATGCTCTTCTTCAGTGGAAATCCACCCTTGAAAGAACAAACAATCCTATTGAATCCTCATGGTCAATTCTTCCTCGAAATTCCTCAAACTCTTCTTCAAATCAAAGTACAAGTGTGAGCCCATGTACTTGGTTTGGAGTTTCTTGCAATCTCGAAGGAAGTGTGAATCGGTTGAACCTTTCAGTGTCAGTCATAAAAGGTACGCTTTACAACTTTTCATTCACATCGTTTCCTAATCTCGCGTACATTGATCTCGCCCAAAATGAATTTTTCGGTACCATCCCACCTCAAATTGGGTCCCTCTCTAAACTTGTGTATCTCGATTTGTCTACTAATAATTTTGTTGGTATAATCCCGCCCGAAATATGCTTGCTCACTAATCTTGAAGTCCTCCATTTGGTTGAATGTCAACTTAATGGCTCAATTCCTAGTGAGATAGGTCAGCTAACGTCTCTTTATGACCTCGCATTGTATACCAACAATCTCGAAGGTCCAATTCCCTCTTCAATTGGCAATTTAAGCAATTTGACTCATTTATATCTCTACCAAAATAACCTCACCGGAACCATTCCTCCACAAATGGGGAATCTCACCAATCTTGTTGAGATTTCCTTAAACAATAACCTTCTATTTGGTTCCATCCCATCAAGTTTTGGAAACCTGAATAACCTAATTGTGCTCAACCTATTCTCTAACCAAATAACCGGTTCCATTCCCATGGAACTAGGGAATTTAAAATCACTCCAGAGTTTAGCACTTAGCACGAACAATCTTTCTGGGTCAATTCCACCTTCATTAGGTAATCTAGAATCATTGGCTTTTCTATATTTGTATAATAATCAGCTCACGGGTATGATTCCTAAAGAGCTAGGAAAACTGGGGCTCCTAGTTGATCTATACTTAAATATTAATCGACTCACTGGTTCTATTCCTTCGTCACTTGGTAACCTCACTAATCTTGAAATGTTACTCCTTCGCGACAATCAACTTTCTGGTCCCATTCCACAAGAATTGGGAAGGCTTGAATTGATTGTACTTGCAATAGACAATAATAAACTCTCTGGTTATTTTCCAGAACAAATTTGTAGTGGTGGTAAGCTTCAAAACTTGACCATAAACAGCAACAATCTTATTGGTACCTTTCCCAGAAGTTTGAGAAATTGCTCGGGCTTAATCAGAGTTCGCCTCGATCAAAACCAATTCACTGGAAACATATCCGAAACATTTGGTGTCTATCAAAACTTGCAATTGATGTATCTAAGTGATAACAATTTCTATGGTCATCTTTCTGATAATTGGAGTAAGTGTGAAAAATTGACTGACTTGCAAATTGCAAGGAACAACATCACTGGTAGCATACCACTATCATTTGGAAATTCAACTCAACTAGTTGTACTCGATATTTCGTCAAATAATTTAGTTGGGGAGATTCCAAAGGAATTTGGGAAATTGAAAAATTTGTTGAGGTTGGTTTTGAGCAATAACCAATTTTTCGGAAATATTCCTCAAGAACTCGAATCTTTAACTGAGTTATTGAACCTTGATCTATCTAAAAATAGATTTAATGGGTCCATACCGGCAAATCTTTCAAACTGCTTGAATTTGTTTAACTTGAACTTGAGTAACAACAATTTTAGCCATGAAATTCCAATGGAGATTACCAGATTATTACACTTGTCCACTCTTGATTTAAGTGGTAACTTATTGACAGGGGAGATTCCATCTCAAATCCAAAGTTTGCAAAGTTTGGAGAAGTTGAATCTTTCTCACAATAAACTCTCGGGTGAGCTTCCGAATTCTTTTGACAATATGAATTCATTGTTATATGTTGACATATCATACAATGAACTATATGGTCCTATCCCAAATAGCAAAGGTTTTTCAAATGCGTCTATTGATGTATTACGAGGAAATAATGGTTTATGTGGAAAGGTTGAAGGATTGAAACCTTGTGCGAACTCTACCACTGCGTCAAAGAACAAAGCAAAAAAGAAGCATAAAATCATTCTCATAGTGGAGGAAGTCAAAACGGAGGAGAGAGATGCACATGATCAAGATATATTTTCAATATCTAGTTTCGATGGAAAGTCAATGTACAAAGAAATCTTGAAGGCCACAAATGATTTTGATGTCCAGTATTGTATTGGAGAAGGAGCATTCGGCACTGTTTACAAGGCAAAATTGCAATCGGCTAATGTTGTAGCTGTGAAAAAACTTCACTCAGGTAGCTTAGCCAAAATATTGAGTATAGAAGAAGAGGCAAGGAAATTAGATTGGAAAAGGAGGGTGAACATTATTAAAGGCGTTGCTCATGCCTTGTCTTACATGCACCACGACTGCTCTCCCCCAATTGTTCATCGAGATATATCGAGTAAGAATATTTTGCTTAATTCTGAGTACGAGGCATGTGTTTCTGATTTTGGTACGGCTAAGATTTTGAGGTCAGACTCATCAAATTGGAGCACTCTCGCTGGAACATATGGATATGTCGCACCAGAGCTTGCGTTCACGATGAAAGTAACCGAAAAGTGTGATGTGTATAGCTTTGGAGTATTATCTTTGGAAGTGATTAAAGGAATGCATCCTGGAGATTACAACACTTCACTATTATCTCGGTCAAATGAAGATAGGCAAATTAAAGATGCATTGGACGAACGCCTTCCATGTCCATCACACGAAGTTGAGGAGCTATTGCTATCTATCATACTACTAGCAAAAGCATGTTTACATAGCAATCCTCAATCAAGGCCGACAATGCACATTATTTGTCAGAAGTTATCAGCCAAAACATCTCATTCCTAA

Network for GWHGAAZE011184

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	32	84	1.50E-06
PF13855.7	LRR_8	233	292	2.70E-06
PF13855.7	LRR_8	472	531	1.10E-07
PF13855.7	LRR_8	592	651	2.00E-09
PF00069.26	Pkinase	775	958	8.00E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.219
	SRR3591706	second leaf	8.256
	SRR3591707	mature leaf	16.835
	SRR3591708	Shoot apex	5.571
	SRR3591709	Stem	1.097
	SRR3591710	White floral bud	0.077
	SRR3591711	White flower	0.298
	SRR3591712	Green floral bud	1.187
	SRR3591713	Yellow flower	0.009
SRP173429	SRR8316895	Juvenile bud stage	1.706
	SRR8316896	Juvenile bud stage	1.893
	SRR8316897	Juvenile bud stage	1.799
	SRR8316894	Third green stage	0.975
	SRR8316900	Third green stage	1.542
	SRR8316901	Third green stage	1.316
	SRR8316898	Complete white stage	0.193
	SRR8316899	Complete white stage	1.134
	SRR8316903	Complete white stage	0.163
	SRR8316902	Silver flowering stage	0.153
	SRR8316904	Silver flowering stage	0.382
	SRR8316905	Silver flowering stage	0.115
	SRR8316906	Gold flowering stage	0.330
	SRR8316907	Gold flowering stage	0.275
	SRR8316908	Gold flowering stage	0.881
SRP132670	SRR6706286	Control	0.249
	SRR6706287	Light intensity 50%	0.235
	SRR6706288	Light intensity 20%	0.425
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.662
	CNS0095593	Slightly white alabastrum(diploid) 2	0.361
	CNS0095594	Slightly white alabastrum(diploid) 3	0.810
	CNS0095595	Whole white alabastrum(diploid) 2	0.533
	CNS0095596	Whole white alabastrum(diploid) 3	1.276
	CNS0095597	Whole white alabastrum(diploid) 4	0.460
	CNS0095598	Silvery flower (diploied) 1	0.455
	CNS0095599	Silvery flower (diploied) 2	0.068
	CNS0095600	Silvery flower (diploied) 3	0.068
	CNS0095601	Golden flower (diploid) 1	0.214
	CNS0095602	Golden flower (diploid) 2	0.252
	CNS0095603	Golden flower (diploid) 3	0.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.966
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.521
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.517
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.585
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.080
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.266
	CNS0095610	Silvery flower (tetraploid) 1	0.130
	CNS0095611	Silvery flower (tetraploid) 2	0.142
	CNS0095612	Silvery flower (tetraploid) 3	0.019
	CNS0095613	Golden flower (tetraploid) 1	0.316
	CNS0095614	Golden flower (tetraploid) 2	0.118
	CNS0095615	Golden flower (tetraploid) 3	0.022
CRA001975	CRR073297	Stem 1	0.813
	CRR073298	Stem 2	0.587
	CRR073299	Stem 3	0.291
	CRR073300	Leaf 1	0.314
	CRR073301	Leaf 2	0.256
	CRR073302	Leaf 3	0.247
	CRR073303	Juvenile bud 1	0.140
	CRR073304	Juvenile bud 2	0.306
	CRR073305	Juvenile bud 3	0.148
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.002
	CRR073310	Second white 2	0.062
	CRR073311	Second white 3	0.128
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.035
	CRR073314	Silver flowering 3	0.030
	CRR073315	Gold flowering 1	0.617
	CRR073316	Gold flowering 2	0.516
	CRR073317	Gold flowering 3	0.315
	CRR073318	Tawny withering 1	0.546
	CRR073319	Tawny withering 2	0.526
	CRR073320	Tawny withering 3	0.503