Gene detail

Detail information of GWHGAAZE011205

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006489781.1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|F6HVC1\|F6HVC1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58633.1}
TAIR10	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	52891111	52895768	-
GWHAAZE00000003	mRNA	52891111	52895768	-
GWHAAZE00000003	exon	52891111	52891415	-
GWHAAZE00000003	exon	52891866	52893164	-
GWHAAZE00000003	exon	52893353	52895768	-
GWHAAZE00000003	CDS	52893353	52895768	-
GWHAAZE00000003	CDS	52891866	52893164	-
GWHAAZE00000003	CDS	52891111	52891415	-

Transcript Sequence
>GWHTAAZE011217 ATGGGTTCTCTAGCCTTTGAAAAGCCTCTCCCCCTTCTATCATTTGTCCTCTTTGTTGCAATATTTTCCTTACCCACTATTGCTTCTTCCGCTATTGAAGAAGCAAATGCTTTGCTTAAATGGAAATCCACCCTTCAATTTATACCCAAGCCTATGCAATCCTCTTGGACTTTTCTTCCTCATAAATCCATAAATTCTTCTTCAAATCAAAATACAAGTGAGAGTCCATGCACTTGGTTCGGAGTCTCTTGCAATACTGAAGGAAGCGTAAATCGATTGAACCTTTCGCAATCTAATGTAAAAGGTACGCTTTTCGACCTTTCTTTCAAATCGTTCCCCAATCTCGAGTACATTGATCTTTACATAAATGAACTTTTTGGTACCATCCCACGTCAAATAGGTTCCCTCTCAAAACTTGTATATCTCGTTTTGGCTTCTAATAATTTTATTGGTATAATCCCACCTGAAATATGCTTGCTCACTAGTCTTGAGGTCCTCGATTTGTCTCAAAATCAGCTAAATGGGTCAATTCCTCGTGACATAGGTAGACTAAAGTCTCTTAAAGATCTCGAATTGTATTCCAATAATCTTGAAGGTCCAATTCCCTCTTCTATTTTCAATTTGAGCAACTTGGCTTATTTGTATCTATACAAAAATAAGCTCTCGGGTACCATTCCTCCCGAAATCGGGAATCTCATCAATCTTGTTGAGATCGACTTAAGCGAGAACTTTCTATTTGGTTCCATTCCATCAAGTTTTGGGAACTTGAGTAACCTAACCTTGCTCCAACTATTCATTAACCAGTTAACTGGCTCCATTCCTTCGGAACTAGGGAACTTGAAATTACTCAAAACAATGGCCTTGAGCACAAACAATCTTTCTGGATCAATTCCACCATCGTTTGGTGATCTCGAATCCTTGGCTTATCTTTCTTTGCGAACCAATCAGCTTTCGGGTTCAATTCCATCTTTTATTGAAAATTTGAGCGACTTGGCTTATTTGTTTCTATACAAAAATAAGCTCTCGGGTACCATTCCTCCTCAAATCGGGAATCTCTCCAATCTTGTTGAGATCGACTTAAGCGATAACCTTCTATTTGGTTCCATTCCATCAAGTTTTGGGAACTTAAGTAACCTAACCTTGCTTCACCTATTCAGTAACCAGTTAACTGGATCCATTCCCCCAGAACTAGGGAACTTGAAATTACTCAAGACCATGGACCTCAGCATAAACAATCTTTCTGGTTCAATTCCACCATCGTTAGGTGATCTCGAATCCTCGACTAATCTTTCTTTGCAAACCAATCAGCTTCTGGGTTCAATTCCCTCTTCTATTGACAATTTGAGCAACTTGGCATATTTGATTCTATACAAAAATAAGCTCTCCAGCACCATTCCTCCCGAAATCGGGAATCTCACCAATCTTGTTGAGATCGACTTCAGCGAGAACCTTTTATTTGGTTCTATTCCATCAAGTTTTGGGAACTTGGGTGACCTAACCTTGCTCCAACTATTCAGTAACCAGTTAACTGGCTCCATTCCCCCAGAACTAAGGAACTTGAAATTACTTAAGACTATGGACCTGAGCTCAAACAATCTTTCTGGATCAATTCCATCGTCATTAGGTGATCTCGAATCCTTGATTAATCTTTCTTTACAAACCAATCAGCTTTCAGGTTCAATCCCCTCTTATATTGACAATTTGAGCAACTTGGCTTATTTGTTTCTATTCGAAAATGAGCTCTCGAGTACCATTCCTCCCGAAATCGGGAAACTCACCAATCTTGTTGAGATCAACTTAAGCGATAACTTTTTATTTGGTTCCATTCCATCAAGTTTTGGGAACTTGAGTAACTTATTCTTGCTCAAACTATTCAGTAACCAGTTAACTGGCTCCATTCCCCCGGAACTAGGGAACTTGAAATTGCTTAAGACCATGAGCCTGAGCATAAACAATATTTTTGGCTCAATTCCCTCTTCTATTAATAATTTGAGCAACTTGGCTTATTGTTATTTATTCAAAAATAAGCTCTCAGGTACCATTCCTCCCGAAATCGGGAATCTCACCAATCTTGTTGAGATCCATTTAGGCGAGAACCTTCTATTTGGCTCTATTCCATCAAGTTTTGGGAACTTGAGTAACCTAACCCTGCTCCACCTGTTCAGTAACCAGTTAACTGGCTCCATTCCACCAGAACTAGGGAACTTGAATTTACTTGAGAATCTGGGCCTTGGCATAAACAATCTTTCCGGTTATTTTCCAAATGAGGGATGCAATGGAGGAAAACTTCAAATTTTGACTGCTAACCAAAACAATTTGGTTGGTCCAATTTCCAAAAGCTTGAGAAACTGCTCGAGCTTAACCAGAGTCCGCCTCGAAGGAAACCACTTCACCGGAAACATATCTGAAGTTTTTGTTGGGGAGATTCTAAAGGAGTTTGGTAAATCCAAGCAAATGTTGAAGTTATTTTTGAGCAATAACAAACTTTATGGAAATATTCCTCAAGAACTCGGGTCCCTAATTGAGTTGTTGGAACTTGATTTGTCCAAAAATAGATTAAATGGGTCCATACCAGCAAATCTTTCAAATTGCTTGAATCTGTTTAGTTTGAGCTTGGGTGGCAACAATCTAAGCCAAGATATTCCGGTGGAGATGTTGAATTTATTGCACTTGTCGACTCTCGATTTTAGTGGGAACTCATTAACAGGGGAGATTCCATCTCAAATCAGATGTTTGAAGAGTTTGGAAAAGTTGAATCTTTCTCGCAATAAACTGTCGGGTGAAATTCCAAATGCTTTTGATGATATGAATGCTTTGATATATATTGACATATCATATAACGAGCTTTATGGTCCTATACCAAATAGCAAAGTTTTTGTGAATGCGTCAATACAAGAATTACGAGGGAATAAAGGTTTGTGTGGCAATGTTAAAGGATTGCAGCATTGCGTAAATTCTTCTGTAGTGTCACAGCATAAACATAAAATTAACCATAAACTTGTTCTCGTAGTCGCACTCCCTATCGTTGTATCCCTTTTACTTATGTGTGCCTTTGTGTTATTCTTCGTCATCTATGACCGAAGAAGAAGAAGAAGAAAGTCAAATGCAGAGGAAAAGGATGCGCAAGATCAAGATATATTTTCGATATTAAGTTTCAATGGAAGGGCAATGTACAAACAAATCTTGAAGGCCACAAATGATTTTGATTTCCAATATTGCATCGGACAAGGAGGATTCGGAGTTGTTTACAAAGCGGAAATGCAATCGGGTAATGTTGTAGCTGTGAAGAAACTTCACTCATCATCGGAAATAGTTGACCGTAAAGCTTTTGAGAATGAGGTAAAAGCATTGACAGAAATAAGGCACCGAAACATTGTGAAGCTTCATGGATTTTGTTCACATGCTCGAAATTCATTTTTAGTTTATGATTACCTCGAAAGAGGTAGCTTAGCCGGAATCTTGAGCAAAGAAGAAGAAGCACAAAAGTTGGATTGGCAAAAAAGGGTGAACATTATAAAGGGAGTTGCTCATGCTTTGTCTTACATGCACCATGATTGTTCTCCCCCAATTATTCATCGAGACATATCAAGCAAGAATATTTTGCTTGATTCCGAGTATGAGGCATGTGTTTCAGATTTTGGTACTGCTAAGATTTTAAAGCTAGACTCATCAAATTGGAGTGCAATTGCTGGAACGTTTGGATATATTGCCCCAGAGTTTGCTTACACAATGAAGGTTACGGAAAAGTGTGATGTGTATAGCTTTGGGGTACTATCATTGGAAGTGCTTAGAGGAAAGCATTCGGGTGATTATATTGCTTCACTGTTATCTCAATCAAGTGAAGACAATCAACTTAAAGATGCGTTGGATGAACGACTTCCACCTCCTTTAGTTGAAGAAGAGATGCTATTGATATCCATCGTAATACTAGCCAAAGCATGTTTGAATGATAATCCTCAATCAAGGCCGACAATGCACATCATTTCTCAAACGCTATCAATTAAAACACCTATTTCTTAA

Network for GWHGAAZE011205

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	33	85	1.70E-06
PF13855.7	LRR_8	890	949	1.20E-08
PF00069.26	Pkinase	1073	1329	2.40E-43

Protein Sequence

>GWHPAAZE011211
MGSLAFEKPLPLLSFVLFVAIFSLPTIASSAIEEANALLKWKSTLQFIPKPMQSSWTFLPHKSINSSSNQNTSESPCTWFGVSCNTEGSVNRLNLSQSNVKGTLFDLSFKSFPNLEYIDLYINELFGTIPRQIGSLSKLVYLVLASNNFIGIIPPEICLLTSLEVLDLSQNQLNGSIPRDIGRLKSLKDLELYSNNLEGPIPSSIFNLSNLAYLYLYKNKLSGTIPPEIGNLINLVEIDLSENFLFGSIPSSFGNLSNLTLLQLFINQLTGSIPSELGNLKLLKTMALSTNNLSGSIPPSFGDLESLAYLSLRTNQLSGSIPSFIENLSDLAYLFLYKNKLSGTIPPQIGNLSNLVEIDLSDNLLFGSIPSSFGNLSNLTLLHLFSNQLTGSIPPELGNLKLLKTMDLSINNLSGSIPPSLGDLESSTNLSLQTNQLLGSIPSSIDNLSNLAYLILYKNKLSSTIPPEIGNLTNLVEIDFSENLLFGSIPSSFGNLGDLTLLQLFSNQLTGSIPPELRNLKLLKTMDLSSNNLSGSIPSSLGDLESLINLSLQTNQLSGSIPSYIDNLSNLAYLFLFENELSSTIPPEIGKLTNLVEINLSDNFLFGSIPSSFGNLSNLFLLKLFSNQLTGSIPPELGNLKLLKTMSLSINNIFGSIPSSINNLSNLAYCYLFKNKLSGTIPPEIGNLTNLVEIHLGENLLFGSIPSSFGNLSNLTLLHLFSNQLTGSIPPELGNLNLLENLGLGINNLSGYFPNEGCNGGKLQILTANQNNLVGPISKSLRNCSSLTRVRLEGNHFTGNISEVFVGEILKEFGKSKQMLKLFLSNNKLYGNIPQELGSLIELLELDLSKNRLNGSIPANLSNCLNLFSLSLGGNNLSQDIPVEMLNLLHLSTLDFSGNSLTGEIPSQIRCLKSLEKLNLSRNKLSGEIPNAFDDMNALIYIDISYNELYGPIPNSKVFVNASIQELRGNKGLCGNVKGLQHCVNSSVVSQHKHKINHKLVLVVALPIVVSLLLMCAFVLFFVIYDRRRRRRKSNAEEKDAQDQDIFSILSFNGRAMYKQILKATNDFDFQYCIGQGGFGVVYKAEMQSGNVVAVKKLHSSSEIVDRKAFENEVKALTEIRHRNIVKLHGFCSHARNSFLVYDYLERGSLAGILSKEEEAQKLDWQKRVNIIKGVAHALSYMHHDCSPPIIHRDISSKNILLDSEYEACVSDFGTAKILKLDSSNWSAIAGTFGYIAPEFAYTMKVTEKCDVYSFGVLSLEVLRGKHSGDYIASLLSQSSEDNQLKDALDERLPPPLVEEEMLLISIVILAKACLNDNPQSRPTMHIISQTLSIKTPIS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.177
	SRR3591706	second leaf	0.004
	SRR3591707	mature leaf	0.181
	SRR3591708	Shoot apex	0.095
	SRR3591709	Stem	0.067
	SRR3591710	White floral bud	0.033
	SRR3591711	White flower	0.105
	SRR3591712	Green floral bud	0.115
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	6.257
	SRR8316896	Juvenile bud stage	9.261
	SRR8316897	Juvenile bud stage	0.037
	SRR8316894	Third green stage	4.564
	SRR8316900	Third green stage	4.604
	SRR8316901	Third green stage	5.157
	SRR8316898	Complete white stage	0.359
	SRR8316899	Complete white stage	6.805
	SRR8316903	Complete white stage	1.144
	SRR8316902	Silver flowering stage	0.582
	SRR8316904	Silver flowering stage	0.916
	SRR8316905	Silver flowering stage	0.223
	SRR8316906	Gold flowering stage	0.144
	SRR8316907	Gold flowering stage	0.068
	SRR8316908	Gold flowering stage	0.157
SRP132670	SRR6706286	Control	0.163
	SRR6706287	Light intensity 50%	0.356
	SRR6706288	Light intensity 20%	0.294
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.134
	CNS0095593	Slightly white alabastrum(diploid) 2	1.124
	CNS0095594	Slightly white alabastrum(diploid) 3	1.261
	CNS0095595	Whole white alabastrum(diploid) 2	1.202
	CNS0095596	Whole white alabastrum(diploid) 3	0.170
	CNS0095597	Whole white alabastrum(diploid) 4	0.938
	CNS0095598	Silvery flower (diploied) 1	4.949
	CNS0095599	Silvery flower (diploied) 2	2.418
	CNS0095600	Silvery flower (diploied) 3	1.266
	CNS0095601	Golden flower (diploid) 1	2.870
	CNS0095602	Golden flower (diploid) 2	2.183
	CNS0095603	Golden flower (diploid) 3	2.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.909
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.106
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.964
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.771
	CNS0095610	Silvery flower (tetraploid) 1	0.427
	CNS0095611	Silvery flower (tetraploid) 2	1.007
	CNS0095612	Silvery flower (tetraploid) 3	0.566
	CNS0095613	Golden flower (tetraploid) 1	0.104
	CNS0095614	Golden flower (tetraploid) 2	0.374
	CNS0095615	Golden flower (tetraploid) 3	0.076
CRA001975	CRR073297	Stem 1	1.648
	CRR073298	Stem 2	1.556
	CRR073299	Stem 3	0.200
	CRR073300	Leaf 1	1.120
	CRR073301	Leaf 2	1.167
	CRR073302	Leaf 3	0.185
	CRR073303	Juvenile bud 1	0.166
	CRR073304	Juvenile bud 2	0.013
	CRR073305	Juvenile bud 3	0.168
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.038
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.973
	CRR073316	Gold flowering 2	2.217
	CRR073317	Gold flowering 3	0.872
	CRR073318	Tawny withering 1	0.029
	CRR073319	Tawny withering 2	0.125
	CRR073320	Tawny withering 3	0.146