Gene detail

Detail information of GWHGAAZE011249

Functional Annotation

Database	Orthologs	Annotation
Nr	CAN68996.1	hypothetical protein VITISV_008862 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5AGK9\|A5AGK9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68996.1}
TAIR10	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	54700910	54703992	+
GWHAAZE00000003	mRNA	54700910	54703992	+
GWHAAZE00000003	exon	54700910	54703238	+
GWHAAZE00000003	exon	54703688	54703992	+
GWHAAZE00000003	CDS	54700910	54703238	+
GWHAAZE00000003	CDS	54703688	54703992	+

Transcript Sequence
>GWHTAAZE011261 ATGGACCTGAGCTCAAACAATCTTTCTGGATCAATTCCATCGTCATTAGGTGATCTTGAATCCTTGATTAATCTTTCTTTAGAAACCAATCAGCTTTCGGGTTCAATCCCCTCTTTTATTGACAATTTGAGCAACTTGGCTTATTTGTTTCTATTCGAAAATGAGCTCTCGGGTACCATTCCTCCCGAAATCGGGAAACTCACCAATCTTGTTGAGATCAACTTAAGCGATAACCTTTTATTTGGTTCCATTCCATCAAGTTTTGGGAACTTGAGTAACTTAACCTTGCTTAAACTAATCAGTAACCAGTTAACTGGCTCCATTCCCCCGGAACTAGGGAACTTGAAATTTCTTAAAACCATGGGCTTGAGCATAAACAATCTTTCTGGTTCAATTCCCTCTTCTATTAATAATTTGAGCAACTTGGCTTATTGTTATTTATTCGAAAATAAGCTCTCGGGTACCATTCCTCCCGAAATCGGGAATCTCACCAATCTTGTTGAGATCCACTTAGGCGAGAACCTTCTATTTGGCTCTATTCCATCAAGTTTTGGGAACTTAAGTAACCTAACCCTGCTCCACCTGTTCAGTAACCAGTTAACTGGCTCCATTCCATCAGAACTAGGGAACTTGAATTTACTCGAGAATCTGGGCCTTGGCATAAACAATCTTTCCGGTTATTTTCCAAATGAGATATGCAATGGAGGAAAACTTCAAATTTTGACTGCTAACCGAAACAATTTGGTTGGTCCAATTTCCAAAAGCTTGAGAAACTGCTCAAGCTTAACCAGAGTCCGCCTCGAGGGAAACCACTTCACCGGGAACATATCTGAAGTTTTTGGTGTGTATCCAAACTTGTATTTGATGTATTTAAGTGATAACAAATTCTACGGCCATCTTTCTGATAGTTGGAGCAAGTGTAAAAAGTTAAAAGACATTCAAATAGCGAGGAACAATATCACTGGTGGCATACCGTTAGAATTTGGTAATTCGAATTTCGTTGTACTTGATATTTCGTCAAATAATTTAGTTGGGGAGATTCCAAAGGAGTTTGGTAAATCGAAGCAAATGATGAAGTTATTTTTGAGCAATAACAAACTTTATGGCAATATTCCTCAAGAACTCGGGTCCCTAATTGAGTTGTTGGAACTCGATTTATCCAAAAATAGATTAAATGGGTCCATACCAGCAAATCTTTCAAATTGCCTGAATCTGTTTAGTTTGAGCTTGGGTGGCAACAATCTAAGCCAAGATATTTCGGTGGAGATTATGAATTTATTGCACTTGTCGACTCTCGATTTGAGTGGGAACTCATTAACAGGGGAGATTCCATCTCAAATCAGAAGTTTGAAGAGTTTGGAGAAGTTGAATCTTTCTCGCAATAAACTGTCGGGTGAAATTCCAAATACTTTTGATGATATGAATGCTTTGATATATATTGACATATCATATAACGAGCTTTATGGTCCTATCCCAAATAGCAAAGTTTTTGTGAATGCGTCAATACAAGTATTGCGAGGGAATAAAGGTTTGTGTGGCAATGTTAAAGGATTGCAACATTGCACAAATTCTTCTGTGGTGTCACAGCATAAACATAAAATTAACCATAAACTTGTTCTCGTGGTCGCACTCCCTCTCATTGTATCCCTTTTACTTCTGTGTGCCTTCATGTTATTCTTCATCATCTATGACCGAAGAAGAAAAAGAAGAAAGTCAAAAGCAGAGGAAAAGGATGTGCAAGATCAAGATATATTTTCGATATTAAGTTTCAATGGAAGGGAAATGTACAAAGAAATCTTGAAGGCCACAAATGATTTTGATTTCCAATATTGCATTGGACAAGGAGGATTCGGAGTTGTTTACAAAGCGGAAATGCAATCGGGTAATGTTGTAGCTGTGAAGAAACTTCACTCATTATCGGAAATAGTTGACCGTAAAGCTTTTGAGAATGAGGTAAAAGCATTGACAGAAATAAGGCACCGAAACATTGTGAAGCTTCATGGATTTTGTTCACATGCTCGAAATTCATTTTTAGTTTATGATTACCTCGAAAGAGGTAGCTTAGCCGGAATCCTGAGCAAAGAAGAAGAAGCACAAAAGTTGGATTGGCAAAAAAGGGTGAACATTATAAAGGGAGTTGCTCATGCTTTGTCTTACATGCACCATGATTGTTCTCCCCCAATTATTCATCGAGACATATCAAGCAAGAATATTTTGCTTGATTCTGAGTATGAGGCATGTGTTTCAGATTTTGGTACTGCTAAGATTTTAAAGCTAGACTCATCAAATTGGAGTGCAATCGCTGGAACATTTGGATATACTGCCCTAGAGTTTGCTTACACAATGAAGGTTACGGAAAAGTGTGATGTGTATAGCTTTGGGGTACTATCATTGGAAGTGCTTAAAGGAAAGTATCCGGGTGATTATATTGCTTCACTGTTATCTCAATCAAGTGAAGACAATCAACTTAAAGATGCATTGGATGAACGACTTCCACCTCCTTTAGTTGAAGAAGAGAAGCTATTGATATCCATCGTAATACTAGCCAAAGCATGTTTGAATGATAATCCTCAATCAAGGCCGACAATGCACATCGTTTCTCAAACGCTATCAATCAAAACACCTACTTCTTAA

Network for GWHGAAZE011249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	428	487	6.40E-11
PF07714.18	PK_Tyr_Ser-Thr	609	869	6.90E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.256
	SRR3591706	second leaf	0.944
	SRR3591707	mature leaf	2.215
	SRR3591708	Shoot apex	2.592
	SRR3591709	Stem	1.690
	SRR3591710	White floral bud	5.573
	SRR3591711	White flower	4.726
	SRR3591712	Green floral bud	7.145
	SRR3591713	Yellow flower	0.455
SRP173429	SRR8316895	Juvenile bud stage	4.943
	SRR8316896	Juvenile bud stage	7.944
	SRR8316897	Juvenile bud stage	3.398
	SRR8316894	Third green stage	4.057
	SRR8316900	Third green stage	5.878
	SRR8316901	Third green stage	7.305
	SRR8316898	Complete white stage	0.431
	SRR8316899	Complete white stage	6.923
	SRR8316903	Complete white stage	0.857
	SRR8316902	Silver flowering stage	0.433
	SRR8316904	Silver flowering stage	0.721
	SRR8316905	Silver flowering stage	0.109
	SRR8316906	Gold flowering stage	0.256
	SRR8316907	Gold flowering stage	0.494
	SRR8316908	Gold flowering stage	0.451
SRP132670	SRR6706286	Control	0.658
	SRR6706287	Light intensity 50%	0.597
	SRR6706288	Light intensity 20%	0.697
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.002
	CNS0095593	Slightly white alabastrum(diploid) 2	0.822
	CNS0095594	Slightly white alabastrum(diploid) 3	0.925
	CNS0095595	Whole white alabastrum(diploid) 2	0.521
	CNS0095596	Whole white alabastrum(diploid) 3	0.421
	CNS0095597	Whole white alabastrum(diploid) 4	1.280
	CNS0095598	Silvery flower (diploied) 1	1.924
	CNS0095599	Silvery flower (diploied) 2	0.788
	CNS0095600	Silvery flower (diploied) 3	0.733
	CNS0095601	Golden flower (diploid) 1	1.035
	CNS0095602	Golden flower (diploid) 2	0.765
	CNS0095603	Golden flower (diploid) 3	0.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.966
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.428
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.096
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.232
	CNS0095610	Silvery flower (tetraploid) 1	0.386
	CNS0095611	Silvery flower (tetraploid) 2	0.303
	CNS0095612	Silvery flower (tetraploid) 3	0.683
	CNS0095613	Golden flower (tetraploid) 1	0.108
	CNS0095614	Golden flower (tetraploid) 2	0.250
	CNS0095615	Golden flower (tetraploid) 3	0.016
CRA001975	CRR073297	Stem 1	1.014
	CRR073298	Stem 2	1.174
	CRR073299	Stem 3	0.276
	CRR073300	Leaf 1	1.260
	CRR073301	Leaf 2	1.239
	CRR073302	Leaf 3	0.268
	CRR073303	Juvenile bud 1	0.258
	CRR073304	Juvenile bud 2	0.022
	CRR073305	Juvenile bud 3	0.456
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.015
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.395
	CRR073316	Gold flowering 2	0.425
	CRR073317	Gold flowering 3	0.145
	CRR073318	Tawny withering 1	0.018
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000