Detail information of GWHGAAZE011261


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006360353.19.0092E-114PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum tuberosum]
Swissprottr|Q9LIR8|FBK67_ARATH4E-49F-box/kelch-repeat protein At3g23880
trEMBLtr|M1CWH5|M1CWH5_SOLTU3E-114Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076275}
TAIR10AT3G06240.13E-43F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5501840755019576-
GWHAAZE00000003mRNA5501840755019576-
GWHAAZE00000003exon5501840755019576-
GWHAAZE00000003CDS5501840755019576-
Transcript Sequence

Network for GWHGAAZE011261

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box34735.30E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.550
SRR3591706second leaf4.065
SRR3591707mature leaf6.247
SRR3591708Shoot apex6.230
SRR3591709Stem8.682
SRR3591710White floral bud7.107
SRR3591711White flower5.898
SRR3591712Green floral bud5.414
SRR3591713Yellow flower5.217
SRP173429 SRR8316895Juvenile bud stage 6.395
SRR8316896Juvenile bud stage 6.955
SRR8316897Juvenile bud stage 4.408
SRR8316894Third green stage 3.658
SRR8316900Third green stage 6.881
SRR8316901Third green stage 5.811
SRR8316898Complete white stage 2.773
SRR8316899Complete white stage 9.848
SRR8316903Complete white stage 5.123
SRR8316902Silver flowering stage2.035
SRR8316904Silver flowering stage4.276
SRR8316905Silver flowering stage2.190
SRR8316906Gold flowering stage 6.081
SRR8316907Gold flowering stage 5.449
SRR8316908Gold flowering stage 5.641
SRP132670SRR6706286Control2.064
SRR6706287Light intensity 50%2.493
SRR6706288Light intensity 20%2.160
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.213
CNS0095593Slightly white alabastrum(diploid) 23.024
CNS0095594Slightly white alabastrum(diploid) 32.537
CNS0095595Whole white alabastrum(diploid) 23.888
CNS0095596Whole white alabastrum(diploid) 32.377
CNS0095597Whole white alabastrum(diploid) 42.868
CNS0095598Silvery flower (diploied) 16.555
CNS0095599Silvery flower (diploied) 25.502
CNS0095600Silvery flower (diploied) 37.312
CNS0095601Golden flower (diploid) 15.231
CNS0095602Golden flower (diploid) 27.745
CNS0095603Golden flower (diploid) 37.194
CNS0095604Slightly white alabastrum(tetraploid) 15.921
CNS0095605Slightly white alabastrum(tetraploid) 25.329
CNS0095606Slightly white alabastrum(tetraploid) 39.915
CNS0095607Whole white alabastrum(tetraploid) 13.466
CNS0095608Whole white alabastrum(tetraploid) 23.215
CNS0095609Whole white alabastrum(tetraploid) 37.989
CNS0095610Silvery flower (tetraploid) 19.668
CNS0095611Silvery flower (tetraploid) 27.435
CNS0095612Silvery flower (tetraploid) 36.812
CNS0095613Golden flower (tetraploid) 14.927
CNS0095614Golden flower (tetraploid) 25.874
CNS0095615Golden flower (tetraploid) 36.141
CRA001975CRR073297Stem 14.407
CRR073298Stem 25.702
CRR073299Stem 32.726
CRR073300Leaf 14.986
CRR073301Leaf 23.212
CRR073302Leaf 32.621
CRR073303Juvenile bud 12.119
CRR073304Juvenile bud 22.066
CRR073305Juvenile bud 32.886
CRR073306Third green 11.311
CRR073307Third green 21.251
CRR073308Third green 30.756
CRR073309Second white 11.086
CRR073310Second white 20.512
CRR073311Second white 31.388
CRR073312Silver flowering 10.719
CRR073313Silver flowering 20.672
CRR073314Silver flowering 30.331
CRR073315Gold flowering 11.685
CRR073316Gold flowering 24.552
CRR073317Gold flowering 33.220
CRR073318Tawny withering 11.644
CRR073319Tawny withering 20.506
CRR073320Tawny withering 31.466