Detail information of GWHGAAZE011262


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006360353.11.1058E-134PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum tuberosum]
Swissprottr|Q8GXC7|FBK50_ARATH7E-50F-box/kelch-repeat protein At3g06240
trEMBLtr|M1CWH5|M1CWH5_SOLTU4E-135Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076275}
TAIR10AT3G06240.13E-44F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5503941155040595+
GWHAAZE00000003mRNA5503941155040595+
GWHAAZE00000003exon5503941155040595+
GWHAAZE00000003CDS5503941155040595+
Transcript Sequence

Network for GWHGAAZE011262

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box34725.30E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.791
SRR3591706second leaf3.483
SRR3591707mature leaf4.176
SRR3591708Shoot apex6.890
SRR3591709Stem5.793
SRR3591710White floral bud6.513
SRR3591711White flower7.428
SRR3591712Green floral bud11.294
SRR3591713Yellow flower4.473
SRP173429 SRR8316895Juvenile bud stage 4.833
SRR8316896Juvenile bud stage 7.946
SRR8316897Juvenile bud stage 2.001
SRR8316894Third green stage 4.075
SRR8316900Third green stage 11.381
SRR8316901Third green stage 9.326
SRR8316898Complete white stage 3.482
SRR8316899Complete white stage 10.940
SRR8316903Complete white stage 7.866
SRR8316902Silver flowering stage2.774
SRR8316904Silver flowering stage4.990
SRR8316905Silver flowering stage2.278
SRR8316906Gold flowering stage 6.323
SRR8316907Gold flowering stage 3.753
SRR8316908Gold flowering stage 3.935
SRP132670SRR6706286Control3.529
SRR6706287Light intensity 50%3.992
SRR6706288Light intensity 20%3.705
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.157
CNS0095593Slightly white alabastrum(diploid) 27.088
CNS0095594Slightly white alabastrum(diploid) 39.555
CNS0095595Whole white alabastrum(diploid) 27.379
CNS0095596Whole white alabastrum(diploid) 38.418
CNS0095597Whole white alabastrum(diploid) 48.861
CNS0095598Silvery flower (diploied) 17.735
CNS0095599Silvery flower (diploied) 26.629
CNS0095600Silvery flower (diploied) 311.210
CNS0095601Golden flower (diploid) 15.584
CNS0095602Golden flower (diploid) 29.076
CNS0095603Golden flower (diploid) 38.915
CNS0095604Slightly white alabastrum(tetraploid) 18.307
CNS0095605Slightly white alabastrum(tetraploid) 26.893
CNS0095606Slightly white alabastrum(tetraploid) 313.093
CNS0095607Whole white alabastrum(tetraploid) 17.950
CNS0095608Whole white alabastrum(tetraploid) 25.881
CNS0095609Whole white alabastrum(tetraploid) 37.915
CNS0095610Silvery flower (tetraploid) 18.091
CNS0095611Silvery flower (tetraploid) 27.338
CNS0095612Silvery flower (tetraploid) 39.308
CNS0095613Golden flower (tetraploid) 13.831
CNS0095614Golden flower (tetraploid) 26.178
CNS0095615Golden flower (tetraploid) 35.969
CRA001975CRR073297Stem 16.047
CRR073298Stem 25.880
CRR073299Stem 35.904
CRR073300Leaf 17.240
CRR073301Leaf 25.841
CRR073302Leaf 34.849
CRR073303Juvenile bud 14.942
CRR073304Juvenile bud 24.857
CRR073305Juvenile bud 36.680
CRR073306Third green 12.616
CRR073307Third green 22.482
CRR073308Third green 31.663
CRR073309Second white 14.037
CRR073310Second white 22.968
CRR073311Second white 32.256
CRR073312Silver flowering 13.682
CRR073313Silver flowering 22.825
CRR073314Silver flowering 31.639
CRR073315Gold flowering 12.893
CRR073316Gold flowering 23.392
CRR073317Gold flowering 34.565
CRR073318Tawny withering 15.657
CRR073319Tawny withering 25.577
CRR073320Tawny withering 34.722