Detail information of GWHGAAZE011267


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006360353.14.0309E-82PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum tuberosum]
Swissprottr|Q8GXC7|FBK50_ARATH3E-30F-box/kelch-repeat protein At3g06240
trEMBLtr|M1CWH5|M1CWH5_SOLTU2E-82Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076275}
TAIR10AT3G06240.14E-27F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5509525755096063+
GWHAAZE00000003mRNA5509525755096063+
GWHAAZE00000003exon5509525755096063+
GWHAAZE00000003CDS5509525755096063+
Transcript Sequence

Network for GWHGAAZE011267

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box34723.00E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.558
SRR3591706second leaf1.855
SRR3591707mature leaf2.576
SRR3591708Shoot apex3.608
SRR3591709Stem2.776
SRR3591710White floral bud7.799
SRR3591711White flower5.408
SRR3591712Green floral bud12.107
SRR3591713Yellow flower4.465
SRP173429 SRR8316895Juvenile bud stage 3.389
SRR8316896Juvenile bud stage 7.053
SRR8316897Juvenile bud stage 5.116
SRR8316894Third green stage 2.618
SRR8316900Third green stage 8.062
SRR8316901Third green stage 7.239
SRR8316898Complete white stage 1.873
SRR8316899Complete white stage 7.524
SRR8316903Complete white stage 4.133
SRR8316902Silver flowering stage2.098
SRR8316904Silver flowering stage3.491
SRR8316905Silver flowering stage0.849
SRR8316906Gold flowering stage 3.700
SRR8316907Gold flowering stage 3.623
SRR8316908Gold flowering stage 5.984
SRP132670SRR6706286Control3.331
SRR6706287Light intensity 50%3.719
SRR6706288Light intensity 20%3.394
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.710
CNS0095593Slightly white alabastrum(diploid) 27.335
CNS0095594Slightly white alabastrum(diploid) 39.404
CNS0095595Whole white alabastrum(diploid) 212.010
CNS0095596Whole white alabastrum(diploid) 310.861
CNS0095597Whole white alabastrum(diploid) 49.478
CNS0095598Silvery flower (diploied) 13.778
CNS0095599Silvery flower (diploied) 22.389
CNS0095600Silvery flower (diploied) 35.476
CNS0095601Golden flower (diploid) 12.574
CNS0095602Golden flower (diploid) 23.790
CNS0095603Golden flower (diploid) 35.063
CNS0095604Slightly white alabastrum(tetraploid) 13.757
CNS0095605Slightly white alabastrum(tetraploid) 23.038
CNS0095606Slightly white alabastrum(tetraploid) 34.845
CNS0095607Whole white alabastrum(tetraploid) 14.746
CNS0095608Whole white alabastrum(tetraploid) 23.524
CNS0095609Whole white alabastrum(tetraploid) 34.448
CNS0095610Silvery flower (tetraploid) 14.705
CNS0095611Silvery flower (tetraploid) 25.583
CNS0095612Silvery flower (tetraploid) 34.766
CNS0095613Golden flower (tetraploid) 11.480
CNS0095614Golden flower (tetraploid) 23.380
CNS0095615Golden flower (tetraploid) 34.459
CRA001975CRR073297Stem 14.322
CRR073298Stem 25.182
CRR073299Stem 33.772
CRR073300Leaf 16.238
CRR073301Leaf 25.201
CRR073302Leaf 34.066
CRR073303Juvenile bud 13.451
CRR073304Juvenile bud 23.195
CRR073305Juvenile bud 33.896
CRR073306Third green 12.625
CRR073307Third green 21.272
CRR073308Third green 31.587
CRR073309Second white 12.452
CRR073310Second white 22.589
CRR073311Second white 31.926
CRR073312Silver flowering 12.770
CRR073313Silver flowering 21.633
CRR073314Silver flowering 32.079
CRR073315Gold flowering 11.354
CRR073316Gold flowering 22.456
CRR073317Gold flowering 31.206
CRR073318Tawny withering 13.225
CRR073319Tawny withering 21.318
CRR073320Tawny withering 31.364