Gene detail

Detail information of GWHGAAZE011270

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264074.1	9.30049E-90	PREDICTED: putative F-box protein PP2-B12 [Nelumbo nucifera]
Swissprot	tr\|Q9FLU7\|P2B12_ARATH	6E-68	Putative F-box protein PP2-B12
trEMBL	tr\|A0A068TT44\|A0A068TT44_COFCA	1E-86	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99431.1}
TAIR10	AT5G24560.1	4E-56	phloem protein 2-B12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	55197933	55202373	+
GWHAAZE00000003	mRNA	55197933	55202373	+
GWHAAZE00000003	exon	55197933	55198196	+
GWHAAZE00000003	exon	55199167	55199285	+
GWHAAZE00000003	exon	55201929	55202373	+
GWHAAZE00000003	CDS	55197933	55198196	+
GWHAAZE00000003	CDS	55199167	55199285	+
GWHAAZE00000003	CDS	55201929	55202373	+

Transcript Sequence
>GWHTAAZE011282 ATGGAGACAAATATATCGATGTTGCCGGAAGGTTGCATATCGGAAATTCTATCGCTAACGTCGCCTTGGGATGCGTGTAGATCGTCGGCCGTCTCACCGGTATTCAAATCGGCGGCAGATTCAGATGCCTTATGGGAGCGATTCCTGCCGTCCGATTACCTGGATATCCTTGTACGATCGGTTTCTCCGGTGGTCTACACCACCAGAAAACAACTCTATTTCCTCCTCTCCGACTCCCCTATTCTCCTTGACGGTGGCAAATTGAGCTTTGTGCTGGATAAACAGAGTGGGAAAAAGTGTTATATGTTACCATCAAGAGAACTGTCAATTGCATGGATGAATGATGCAAGATACTGGAAATGGCCATCTATACGTGAATCGAGATTTCCGGAGGTGGCTATGCTTATAATCGTCTGCTGGCTAGAAATTAGAGGTCACATAAGAAGTCGAATGCTTTCACCGGTGACTACATATGCAGCATATCTTGTCTACAAAATTTCCCAAACAATGAACTGTGGTCTCGACTGCCCGGCAAATACATTGGTCAGATTTATAGGAAATGGAGTGGAATCTGATGCCTCTGTTGTTTTCTTGAAAGAACCGCTAGAGAGACTCATCCCTAGAGGCTCCACATATCGGTTTCCACAAAGAAGAGAGGATGGGTGGATGGAGATTGAACTCGGATCGTTTTTCAATGGTCGGGTTGATGATGATGGTGAAGTGATGATGGAATTAATGGAGATAGAGTTGGGGCATGGCAAATATGGTTTGATTCTTGAAGGCATTGAGGTTCGGCCAAAAGAGAAGGTTGTTAATAAAGACGCCTAA

Network for GWHGAAZE011270

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14299.7	PP2	98	266	2.30E-49

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.050
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	3.543
	SRR3591711	White flower	0.156
	SRR3591712	Green floral bud	6.091
	SRR3591713	Yellow flower	0.094
SRP173429	SRR8316895	Juvenile bud stage	0.417
	SRR8316896	Juvenile bud stage	4.506
	SRR8316897	Juvenile bud stage	2.346
	SRR8316894	Third green stage	1.752
	SRR8316900	Third green stage	13.778
	SRR8316901	Third green stage	12.493
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.018
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.221
	SRR8316904	Silver flowering stage	0.062
	SRR8316905	Silver flowering stage	0.078
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.068
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.369
	SRR6706287	Light intensity 50%	3.101
	SRR6706288	Light intensity 20%	2.634
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.009
	CNS0095593	Slightly white alabastrum(diploid) 2	6.298
	CNS0095594	Slightly white alabastrum(diploid) 3	9.802
	CNS0095595	Whole white alabastrum(diploid) 2	17.821
	CNS0095596	Whole white alabastrum(diploid) 3	19.853
	CNS0095597	Whole white alabastrum(diploid) 4	17.611
	CNS0095598	Silvery flower (diploied) 1	0.206
	CNS0095599	Silvery flower (diploied) 2	1.210
	CNS0095600	Silvery flower (diploied) 3	0.195
	CNS0095601	Golden flower (diploid) 1	0.101
	CNS0095602	Golden flower (diploid) 2	0.235
	CNS0095603	Golden flower (diploid) 3	0.338
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.239
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.035
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.460
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.518
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.321
	CNS0095610	Silvery flower (tetraploid) 1	0.076
	CNS0095611	Silvery flower (tetraploid) 2	1.234
	CNS0095612	Silvery flower (tetraploid) 3	1.692
	CNS0095613	Golden flower (tetraploid) 1	0.490
	CNS0095614	Golden flower (tetraploid) 2	0.096
	CNS0095615	Golden flower (tetraploid) 3	1.629
CRA001975	CRR073297	Stem 1	2.238
	CRR073298	Stem 2	2.570
	CRR073299	Stem 3	1.909
	CRR073300	Leaf 1	6.391
	CRR073301	Leaf 2	6.139
	CRR073302	Leaf 3	4.157
	CRR073303	Juvenile bud 1	5.517
	CRR073304	Juvenile bud 2	4.743
	CRR073305	Juvenile bud 3	0.186
	CRR073306	Third green 1	0.921
	CRR073307	Third green 2	1.065
	CRR073308	Third green 3	1.601
	CRR073309	Second white 1	0.431
	CRR073310	Second white 2	0.082
	CRR073311	Second white 3	0.658
	CRR073312	Silver flowering 1	0.594
	CRR073313	Silver flowering 2	2.323
	CRR073314	Silver flowering 3	1.098
	CRR073315	Gold flowering 1	0.947
	CRR073316	Gold flowering 2	0.172
	CRR073317	Gold flowering 3	0.544
	CRR073318	Tawny withering 1	1.138
	CRR073319	Tawny withering 2	1.125
	CRR073320	Tawny withering 3	1.870