Detail information of GWHGAAZE011271


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009614765.14.45697E-19PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis]
Swissprottr|Q8GXC7|FBK50_ARATH1E-11F-box/kelch-repeat protein At3g06240
trEMBLtr|M1CWH5|M1CWH5_SOLTU3E-18Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076275}
TAIR10AT3G06240.13E-10F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5521450855214792-
GWHAAZE00000003mRNA5521450855214792-
GWHAAZE00000003exon5521450855214792-
GWHAAZE00000003CDS5521450855214792-
Transcript Sequence

Network for GWHGAAZE011271

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box1333.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.540
SRR3591706second leaf1.705
SRR3591707mature leaf1.641
SRR3591708Shoot apex1.545
SRR3591709Stem2.256
SRR3591710White floral bud1.851
SRR3591711White flower1.407
SRR3591712Green floral bud1.644
SRR3591713Yellow flower1.154
SRP173429 SRR8316895Juvenile bud stage 0.894
SRR8316896Juvenile bud stage 0.584
SRR8316897Juvenile bud stage 0.698
SRR8316894Third green stage 1.075
SRR8316900Third green stage 0.587
SRR8316901Third green stage 0.986
SRR8316898Complete white stage 0.327
SRR8316899Complete white stage 1.302
SRR8316903Complete white stage 1.637
SRR8316902Silver flowering stage0.386
SRR8316904Silver flowering stage1.169
SRR8316905Silver flowering stage0.432
SRR8316906Gold flowering stage 0.591
SRR8316907Gold flowering stage 0.490
SRR8316908Gold flowering stage 0.382
SRP132670SRR6706286Control0.256
SRR6706287Light intensity 50%0.052
SRR6706288Light intensity 20%0.047
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.543
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.180
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.073
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.756
CNS0095599Silvery flower (diploied) 20.375
CNS0095600Silvery flower (diploied) 30.432
CNS0095601Golden flower (diploid) 10.163
CNS0095602Golden flower (diploid) 21.782
CNS0095603Golden flower (diploid) 30.481
CNS0095604Slightly white alabastrum(tetraploid) 10.400
CNS0095605Slightly white alabastrum(tetraploid) 20.473
CNS0095606Slightly white alabastrum(tetraploid) 30.517
CNS0095607Whole white alabastrum(tetraploid) 10.544
CNS0095608Whole white alabastrum(tetraploid) 20.597
CNS0095609Whole white alabastrum(tetraploid) 30.925
CNS0095610Silvery flower (tetraploid) 11.232
CNS0095611Silvery flower (tetraploid) 21.409
CNS0095612Silvery flower (tetraploid) 30.433
CNS0095613Golden flower (tetraploid) 10.520
CNS0095614Golden flower (tetraploid) 21.028
CNS0095615Golden flower (tetraploid) 31.247
CRA001975CRR073297Stem 10.545
CRR073298Stem 20.493
CRR073299Stem 30.456
CRR073300Leaf 10.325
CRR073301Leaf 20.087
CRR073302Leaf 30.138
CRR073303Juvenile bud 10.325
CRR073304Juvenile bud 20.393
CRR073305Juvenile bud 30.714
CRR073306Third green 10.224
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.152
CRR073310Second white 20.052
CRR073311Second white 30.000
CRR073312Silver flowering 10.067
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.111
CRR073315Gold flowering 10.241
CRR073316Gold flowering 20.184
CRR073317Gold flowering 30.270
CRR073318Tawny withering 10.526
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.146