Detail information of GWHGAAZE011272


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006360353.19.57261E-66PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum tuberosum]
Swissprottr|Q8GXC7|FBK50_ARATH7E-26F-box/kelch-repeat protein At3g06240
trEMBLtr|M1CWH5|M1CWH5_SOLTU4E-66Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076275}
TAIR10AT3G06240.19E-20F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5523148655232085+
GWHAAZE00000003mRNA5523148655232085+
GWHAAZE00000003exon5523148655232085+
GWHAAZE00000003CDS5523148655232085+
Transcript Sequence

Network for GWHGAAZE011272

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box34721.50E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.741
SRR3591706second leaf2.370
SRR3591707mature leaf3.369
SRR3591708Shoot apex5.447
SRR3591709Stem5.209
SRR3591710White floral bud5.073
SRR3591711White flower7.186
SRR3591712Green floral bud7.036
SRR3591713Yellow flower3.098
SRP173429 SRR8316895Juvenile bud stage 4.463
SRR8316896Juvenile bud stage 5.395
SRR8316897Juvenile bud stage 2.867
SRR8316894Third green stage 3.078
SRR8316900Third green stage 6.902
SRR8316901Third green stage 7.061
SRR8316898Complete white stage 2.699
SRR8316899Complete white stage 8.273
SRR8316903Complete white stage 4.327
SRR8316902Silver flowering stage2.044
SRR8316904Silver flowering stage3.299
SRR8316905Silver flowering stage1.551
SRR8316906Gold flowering stage 3.004
SRR8316907Gold flowering stage 2.008
SRR8316908Gold flowering stage 6.038
SRP132670SRR6706286Control3.024
SRR6706287Light intensity 50%2.610
SRR6706288Light intensity 20%2.674
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.543
CNS0095593Slightly white alabastrum(diploid) 23.959
CNS0095594Slightly white alabastrum(diploid) 36.303
CNS0095595Whole white alabastrum(diploid) 24.272
CNS0095596Whole white alabastrum(diploid) 31.996
CNS0095597Whole white alabastrum(diploid) 47.145
CNS0095598Silvery flower (diploied) 13.325
CNS0095599Silvery flower (diploied) 23.332
CNS0095600Silvery flower (diploied) 37.773
CNS0095601Golden flower (diploid) 12.660
CNS0095602Golden flower (diploid) 26.923
CNS0095603Golden flower (diploid) 37.242
CNS0095604Slightly white alabastrum(tetraploid) 15.900
CNS0095605Slightly white alabastrum(tetraploid) 24.216
CNS0095606Slightly white alabastrum(tetraploid) 37.301
CNS0095607Whole white alabastrum(tetraploid) 14.239
CNS0095608Whole white alabastrum(tetraploid) 24.631
CNS0095609Whole white alabastrum(tetraploid) 34.069
CNS0095610Silvery flower (tetraploid) 16.307
CNS0095611Silvery flower (tetraploid) 25.628
CNS0095612Silvery flower (tetraploid) 34.475
CNS0095613Golden flower (tetraploid) 12.885
CNS0095614Golden flower (tetraploid) 22.870
CNS0095615Golden flower (tetraploid) 34.799
CRA001975CRR073297Stem 13.908
CRR073298Stem 22.421
CRR073299Stem 33.018
CRR073300Leaf 13.666
CRR073301Leaf 22.810
CRR073302Leaf 31.819
CRR073303Juvenile bud 12.627
CRR073304Juvenile bud 23.057
CRR073305Juvenile bud 32.481
CRR073306Third green 11.415
CRR073307Third green 20.684
CRR073308Third green 30.696
CRR073309Second white 12.861
CRR073310Second white 21.049
CRR073311Second white 31.361
CRR073312Silver flowering 10.921
CRR073313Silver flowering 21.001
CRR073314Silver flowering 31.466
CRR073315Gold flowering 10.948
CRR073316Gold flowering 22.348
CRR073317Gold flowering 31.573
CRR073318Tawny withering 13.559
CRR073319Tawny withering 22.215
CRR073320Tawny withering 31.756