Detail information of GWHGAAZE011275


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010264073.15.03253E-32PREDICTED: F-box protein PP2-B10-like [Nelumbo nucifera]
Swissprottr|Q9FV02|SKIP3_ARATH4E-22F-box protein SKIP3
trEMBLtr|M1CWD0|M1CWD0_SOLTU5E-28Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076211}
TAIR10AT1G80110.16E-17phloem protein 2-B11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5526564255265994+
GWHAAZE00000003mRNA5526564255265994+
GWHAAZE00000003exon5526564255265905+
GWHAAZE00000003exon5526597755265994+
GWHAAZE00000003CDS5526564255265905+
GWHAAZE00000003CDS5526597755265994+
Transcript Sequence

Network for GWHGAAZE011275

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.350
SRR3591710White floral bud5.475
SRR3591711White flower0.435
SRR3591712Green floral bud4.929
SRR3591713Yellow flower0.141
SRP173429 SRR8316895Juvenile bud stage 0.428
SRR8316896Juvenile bud stage 1.500
SRR8316897Juvenile bud stage 0.132
SRR8316894Third green stage 0.223
SRR8316900Third green stage 1.141
SRR8316901Third green stage 1.197
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.192
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.572
SRR6706287Light intensity 50%1.740
SRR6706288Light intensity 20%1.321
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.265
CNS0095593Slightly white alabastrum(diploid) 21.905
CNS0095594Slightly white alabastrum(diploid) 33.089
CNS0095595Whole white alabastrum(diploid) 22.239
CNS0095596Whole white alabastrum(diploid) 33.559
CNS0095597Whole white alabastrum(diploid) 42.381
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.367
CNS0095600Silvery flower (diploied) 30.132
CNS0095601Golden flower (diploid) 10.107
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.328
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.031
CNS0095610Silvery flower (tetraploid) 10.082
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.094
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.022
CRA001975CRR073297Stem 11.549
CRR073298Stem 21.101
CRR073299Stem 30.507
CRR073300Leaf 12.598
CRR073301Leaf 22.182
CRR073302Leaf 31.827
CRR073303Juvenile bud 11.987
CRR073304Juvenile bud 20.968
CRR073305Juvenile bud 30.030
CRR073306Third green 10.507
CRR073307Third green 20.987
CRR073308Third green 31.001
CRR073309Second white 10.027
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.068
CRR073313Silver flowering 20.033
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.247
CRR073316Gold flowering 20.514
CRR073317Gold flowering 30.338
CRR073318Tawny withering 10.135
CRR073319Tawny withering 20.359
CRR073320Tawny withering 30.316