Detail information of GWHGAAZE011277


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009614765.12.0391E-124PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis]
Swissprottr|Q9LIR8|FBK67_ARATH2E-51F-box/kelch-repeat protein At3g23880
trEMBLtr|M1CWH5|M1CWH5_SOLTU1E-124Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076275}
TAIR10AT3G23880.14E-45F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene5530801655309194+
GWHAAZE00000003mRNA5530801655309194+
GWHAAZE00000003exon5530801655309194+
GWHAAZE00000003CDS5530801655309194+
Transcript Sequence

Network for GWHGAAZE011277

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box33715.30E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.284
SRR3591706second leaf1.835
SRR3591707mature leaf2.543
SRR3591708Shoot apex2.874
SRR3591709Stem3.569
SRR3591710White floral bud4.550
SRR3591711White flower3.711
SRR3591712Green floral bud7.634
SRR3591713Yellow flower2.265
SRP173429 SRR8316895Juvenile bud stage 3.419
SRR8316896Juvenile bud stage 4.937
SRR8316897Juvenile bud stage 2.353
SRR8316894Third green stage 1.797
SRR8316900Third green stage 6.952
SRR8316901Third green stage 5.984
SRR8316898Complete white stage 1.273
SRR8316899Complete white stage 5.046
SRR8316903Complete white stage 3.022
SRR8316902Silver flowering stage1.395
SRR8316904Silver flowering stage3.034
SRR8316905Silver flowering stage1.071
SRR8316906Gold flowering stage 3.414
SRR8316907Gold flowering stage 2.676
SRR8316908Gold flowering stage 3.172
SRP132670SRR6706286Control1.496
SRR6706287Light intensity 50%1.992
SRR6706288Light intensity 20%1.826
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.916
CNS0095593Slightly white alabastrum(diploid) 25.220
CNS0095594Slightly white alabastrum(diploid) 36.496
CNS0095595Whole white alabastrum(diploid) 28.163
CNS0095596Whole white alabastrum(diploid) 37.582
CNS0095597Whole white alabastrum(diploid) 46.953
CNS0095598Silvery flower (diploied) 12.475
CNS0095599Silvery flower (diploied) 22.785
CNS0095600Silvery flower (diploied) 33.683
CNS0095601Golden flower (diploid) 11.684
CNS0095602Golden flower (diploid) 23.803
CNS0095603Golden flower (diploid) 33.305
CNS0095604Slightly white alabastrum(tetraploid) 14.236
CNS0095605Slightly white alabastrum(tetraploid) 23.052
CNS0095606Slightly white alabastrum(tetraploid) 35.213
CNS0095607Whole white alabastrum(tetraploid) 15.184
CNS0095608Whole white alabastrum(tetraploid) 24.708
CNS0095609Whole white alabastrum(tetraploid) 35.555
CNS0095610Silvery flower (tetraploid) 14.672
CNS0095611Silvery flower (tetraploid) 24.438
CNS0095612Silvery flower (tetraploid) 34.774
CNS0095613Golden flower (tetraploid) 13.139
CNS0095614Golden flower (tetraploid) 23.521
CNS0095615Golden flower (tetraploid) 33.699
CRA001975CRR073297Stem 13.187
CRR073298Stem 23.625
CRR073299Stem 33.504
CRR073300Leaf 14.395
CRR073301Leaf 23.105
CRR073302Leaf 32.723
CRR073303Juvenile bud 13.625
CRR073304Juvenile bud 22.218
CRR073305Juvenile bud 33.211
CRR073306Third green 11.594
CRR073307Third green 20.967
CRR073308Third green 31.339
CRR073309Second white 11.571
CRR073310Second white 23.533
CRR073311Second white 31.517
CRR073312Silver flowering 12.006
CRR073313Silver flowering 21.167
CRR073314Silver flowering 30.529
CRR073315Gold flowering 11.412
CRR073316Gold flowering 21.422
CRR073317Gold flowering 30.597
CRR073318Tawny withering 11.839
CRR073319Tawny withering 21.062
CRR073320Tawny withering 31.657