Gene detail

Detail information of GWHGAAZE011279

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264074.1	8.04011E-91	PREDICTED: putative F-box protein PP2-B12 [Nelumbo nucifera]
Swissprot	tr\|Q9FLU7\|P2B12_ARATH	7E-68	Putative F-box protein PP2-B12
trEMBL	tr\|A0A068TT44\|A0A068TT44_COFCA	1E-87	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99431.1}
TAIR10	AT5G24560.1	5E-56	phloem protein 2-B12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	55395060	55399508	+
GWHAAZE00000003	mRNA	55395060	55399508	+
GWHAAZE00000003	exon	55395060	55395323	+
GWHAAZE00000003	exon	55396291	55396409	+
GWHAAZE00000003	exon	55399064	55399508	+
GWHAAZE00000003	CDS	55395060	55395323	+
GWHAAZE00000003	CDS	55396291	55396409	+
GWHAAZE00000003	CDS	55399064	55399508	+

Transcript Sequence
>GWHTAAZE011291 ATGGAGACAAATATATCGATGTTGCCGGAAGGCTGCATATCGGAAATTCTATCGCTAACGTCGCCTTGGGATGCGTGTAGATCGTCGGCCGTCTCACCGGTATTCAAATCGGCGGCAGATTCAGATGCCTTATGGGAGCGATTCCTGCCGTCCGATTACCTGGATATCCTTGTACGATCGGTTTCTCCGGTGGTCTACACCACCAGAAAACAACTCTATTTCCTCCTCTCCGACTCCCCTATTCTCCTTGACGGTGGCAAATTGAGCTTTGTGCTGGATAAACAGAGTGGGAAAAAGTGTTATATGTTACCATCAAGAGAACTGTCAATTGCATGGATGAATGATGCAAGATACTGGAAATGGCCATCTATACGTGAATCAAGATTTCCGGAGGTGGCTATGCTTATAATCGTCTGCTGGCTAGAAATTAGAGGTCACATAAGAAGTCGAATGCTTTCACCGGTGACTACATATGCAGCATATCTTGTCTACAAAATTTCCCAAACAATGAACTGTGGTCTCGACTGCCCGGCAAATACATTGGTCAGATTTATAGGAAATGGAGTGGAATCTGATGCCTCTGTTGTTTTCTTGAAAGAACCGCTAGAGAGACTCATCCCTAGAGGCTCCACATATCGGTTTCCACAAAGAAGAGAGGATGGGTGGATGGAGATTGAACTCGGATCGTTTTTCAATGGTCGGGGTGATGATGATGGTGAAGTGATGATGGAATTAATGGAGATAGAGTTGGGGCATGGCAAATATGGTTTGATTCTTGAAGGCATTGAGGTTCGGCCAAAAGAGAAGGTTGTTAATAAAGACGCCTAA

Network for GWHGAAZE011279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14299.7	PP2	98	266	2.20E-49

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.114
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.114
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	6.637
	SRR3591711	White flower	0.155
	SRR3591712	Green floral bud	15.498
	SRR3591713	Yellow flower	0.092
SRP173429	SRR8316895	Juvenile bud stage	0.574
	SRR8316896	Juvenile bud stage	3.612
	SRR8316897	Juvenile bud stage	0.710
	SRR8316894	Third green stage	2.371
	SRR8316900	Third green stage	14.201
	SRR8316901	Third green stage	13.305
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.018
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.111
	SRR8316904	Silver flowering stage	0.308
	SRR8316905	Silver flowering stage	0.078
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.068
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	4.238
	SRR6706287	Light intensity 50%	4.628
	SRR6706288	Light intensity 20%	3.489
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.022
	CNS0095593	Slightly white alabastrum(diploid) 2	7.572
	CNS0095594	Slightly white alabastrum(diploid) 3	10.498
	CNS0095595	Whole white alabastrum(diploid) 2	18.838
	CNS0095596	Whole white alabastrum(diploid) 3	23.825
	CNS0095597	Whole white alabastrum(diploid) 4	22.497
	CNS0095598	Silvery flower (diploied) 1	0.220
	CNS0095599	Silvery flower (diploied) 2	1.345
	CNS0095600	Silvery flower (diploied) 3	0.462
	CNS0095601	Golden flower (diploid) 1	0.209
	CNS0095602	Golden flower (diploid) 2	0.407
	CNS0095603	Golden flower (diploid) 3	0.094
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.653
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.894
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.035
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.346
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.022
	CNS0095610	Silvery flower (tetraploid) 1	0.205
	CNS0095611	Silvery flower (tetraploid) 2	0.890
	CNS0095612	Silvery flower (tetraploid) 3	1.897
	CNS0095613	Golden flower (tetraploid) 1	0.435
	CNS0095614	Golden flower (tetraploid) 2	0.185
	CNS0095615	Golden flower (tetraploid) 3	1.351
CRA001975	CRR073297	Stem 1	1.710
	CRR073298	Stem 2	3.502
	CRR073299	Stem 3	1.687
	CRR073300	Leaf 1	7.915
	CRR073301	Leaf 2	6.088
	CRR073302	Leaf 3	5.657
	CRR073303	Juvenile bud 1	6.277
	CRR073304	Juvenile bud 2	5.335
	CRR073305	Juvenile bud 3	0.120
	CRR073306	Third green 1	1.335
	CRR073307	Third green 2	1.592
	CRR073308	Third green 3	2.603
	CRR073309	Second white 1	0.141
	CRR073310	Second white 2	0.082
	CRR073311	Second white 3	0.504
	CRR073312	Silver flowering 1	1.565
	CRR073313	Silver flowering 2	2.333
	CRR073314	Silver flowering 3	1.576
	CRR073315	Gold flowering 1	1.298
	CRR073316	Gold flowering 2	0.093
	CRR073317	Gold flowering 3	0.986
	CRR073318	Tawny withering 1	1.154
	CRR073319	Tawny withering 2	1.227
	CRR073320	Tawny withering 3	1.747