Gene detail

Detail information of GWHGAAZE011285

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99431.1	1.68501E-87	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q949S5\|P2B11_ARATH	4E-69	F-box protein PP2-B11
trEMBL	tr\|A0A068TT44\|A0A068TT44_COFCA	6E-88	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99431.1}
TAIR10	AT1G80110.1	6E-57	phloem protein 2-B11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	55581054	55587207	+
GWHAAZE00000003	mRNA	55581054	55587207	+
GWHAAZE00000003	exon	55581054	55581317	+
GWHAAZE00000003	exon	55583125	55583243	+
GWHAAZE00000003	exon	55586805	55587207	+
GWHAAZE00000003	CDS	55581054	55581317	+
GWHAAZE00000003	CDS	55583125	55583243	+
GWHAAZE00000003	CDS	55586805	55587207	+

Transcript Sequence
>GWHTAAZE011297 ATGGTGCCGAGTATTTCGAAGTTGCCGGAGGGCTGCATTTCAGATATTCTATCGCGAACTTCGCCTTGGGATGTGTGCAGATCATCGGCGATCTCAACGGGATTCAAATCAGCGGCCGATTCTGATGCTGTGTGGCACCGGTTCCTGCCGTCCGATTACCCCGAGATCCTTGCACGATCGGATTCTCCTGTGGTGTGCACCACCAAAAAACAGCTCTATTTCCTCCTCTGCGACTCCCTTATTCTCCTTGATGGTGGCAAATTGATATTCATGCTAGATAAAAGGAGTGGGAAGAAATGTTATATGATACCAGCAAGGGAGCTCTCAATTGCGTGGAAGGATGATGACATATACTGGAATTGGCCATCTATATCTGAATCAAGATTTACAGAGGTGGCCAACCTTCGGTTCGTGTGTTGGCTAGATATTTCTGGTAAGATACAAACTCGAATGCTATCGCCGGTGACTAACTATGCAGCATACCTTGTGTACAAAGTGTCCCCAAGTATCCGTGATCACATCGGCCCGGTAAAGGTATCAGTTAGATTTCTAGGGGATGAAGTGGAACCCAAGATCGCTGTTGTTAATCTGAAACAACATGGGAACATGAGAATGGACGGTTGGATGGAGATTGAACTCGGCGAGTTTTTCAGTGATCATGGTGATGGTGGTGAAGTGGAGATGCAATTAAAGGAGACGGAGATTCTTAATGGGAAGTATGGCTTAATTGTTGAAGGCATTGAAGTTCGGCCAAAAGAGACGGTTGCTGTTAGAGACAACCTTTAA

Network for GWHGAAZE011285

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	3	48	6.10E-07
PF14299.7	PP2	98	251	3.70E-47

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.249
	SRR3591706	second leaf	0.732
	SRR3591707	mature leaf	0.116
	SRR3591708	Shoot apex	0.579
	SRR3591709	Stem	2.168
	SRR3591710	White floral bud	3.372
	SRR3591711	White flower	2.282
	SRR3591712	Green floral bud	1.978
	SRR3591713	Yellow flower	2.006
SRP173429	SRR8316895	Juvenile bud stage	0.047
	SRR8316896	Juvenile bud stage	0.042
	SRR8316897	Juvenile bud stage	0.320
	SRR8316894	Third green stage	0.318
	SRR8316900	Third green stage	0.213
	SRR8316901	Third green stage	0.309
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.460
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.426
	SRR8316904	Silver flowering stage	0.379
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.778
	SRR8316907	Gold flowering stage	0.911
	SRR8316908	Gold flowering stage	0.724
SRP132670	SRR6706286	Control	0.202
	SRR6706287	Light intensity 50%	0.128
	SRR6706288	Light intensity 20%	0.188
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.462
	CNS0095593	Slightly white alabastrum(diploid) 2	0.952
	CNS0095594	Slightly white alabastrum(diploid) 3	0.345
	CNS0095595	Whole white alabastrum(diploid) 2	0.702
	CNS0095596	Whole white alabastrum(diploid) 3	0.630
	CNS0095597	Whole white alabastrum(diploid) 4	0.098
	CNS0095598	Silvery flower (diploied) 1	0.200
	CNS0095599	Silvery flower (diploied) 2	0.008
	CNS0095600	Silvery flower (diploied) 3	0.146
	CNS0095601	Golden flower (diploid) 1	1.020
	CNS0095602	Golden flower (diploid) 2	1.241
	CNS0095603	Golden flower (diploid) 3	1.419
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.358
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.528
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.861
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.055
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.114
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.475
	CNS0095610	Silvery flower (tetraploid) 1	0.085
	CNS0095611	Silvery flower (tetraploid) 2	0.334
	CNS0095612	Silvery flower (tetraploid) 3	0.651
	CNS0095613	Golden flower (tetraploid) 1	0.013
	CNS0095614	Golden flower (tetraploid) 2	0.423
	CNS0095615	Golden flower (tetraploid) 3	0.085
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.185
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.099
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.114
	CRR073304	Juvenile bud 2	0.087
	CRR073305	Juvenile bud 3	0.238
	CRR073306	Third green 1	0.293
	CRR073307	Third green 2	0.194
	CRR073308	Third green 3	0.362
	CRR073309	Second white 1	1.303
	CRR073310	Second white 2	2.042
	CRR073311	Second white 3	0.538
	CRR073312	Silver flowering 1	4.867
	CRR073313	Silver flowering 2	1.439
	CRR073314	Silver flowering 3	3.648
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.013
	CRR073318	Tawny withering 1	0.633
	CRR073319	Tawny withering 2	0.215
	CRR073320	Tawny withering 3	0.611