Gene detail

Detail information of GWHGAAZE011288

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99431.1	1.96252E-87	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9ZVQ6\|P2B10_ARATH	2E-69	F-box protein PP2-B10
trEMBL	tr\|A0A068TT44\|A0A068TT44_COFCA	7E-88	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99431.1}
TAIR10	AT2G02360.1	2E-49	phloem protein 2-B10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	55671939	55676688	+
GWHAAZE00000003	mRNA	55671939	55676688	+
GWHAAZE00000003	exon	55671939	55672205	+
GWHAAZE00000003	exon	55674747	55674865	+
GWHAAZE00000003	exon	55676213	55676374	+
GWHAAZE00000003	exon	55676469	55676688	+
GWHAAZE00000003	CDS	55671939	55672205	+
GWHAAZE00000003	CDS	55674747	55674865	+
GWHAAZE00000003	CDS	55676213	55676374	+
GWHAAZE00000003	CDS	55676469	55676688	+

Transcript Sequence
>GWHTAAZE011300 ATGGAGGCAGCGAATATCTTGAAGTTGCCGGAGGGATGCATTTCGGAGATTCTATCGCTTACATCGCCTCGGGATGCGTGCAGCTCATCCGCGATTTCATCCGGATTCAAATCAGCGGCCGATTCTGATGCCGTGTGGCACCGGTTCCTGCCGTCCGATTACCTCGAGATCCTTGCACGATCGGATTCTCCGGTGGTCTACTCCACCAAAAAGCAGCTCTATTTCCTCCTCTGCGACTCTCTTGTTCTGCTTGACGGTGGCAAATTGAGATTCATGCTTGATAAAAGGAGTGGGAAGAAATGTTATATGCTACCATCAAGGGAGCTCTCAATTGCATGGAAGGATGATGAAGCATACTGGAATTGGCCTTCTATGCCTGGATCAAGGTTTACAGAGGTGGCCTTGCTTCAATCCGTGTGTTGGCTAGATATTAGAGGTAAGATAGAAACTCGAATGCTATCGCCAATGACTACCTATGCAGCTTACCTCGTGTACAAATTTGCCCCAAATGCCCGCGCTCACATTGGCCTGGTAAAGACATCGGTTAGACGTGTCCGCGGAGAGCCCGCTTTGCGGCTTCCTCAGGAAAGAACTGACGGTTGGCTGGAGATTGAACTTGGGGAGTTTTCCAGTGATCGTGGCGAAGGTGGTGAAGTGGAAATGCGATTGTGGGAGACTGATTCTCGTCATTGGAAATGTGGCTTAATTGTTGAAGGCATTGAAGTTCGGCCGAAAGAGAAGGTTGCTGCCGGTAGAGATGCTAATTAA

Network for GWHGAAZE011288

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	49	0.0003
PF14299.7	PP2	99	244	7.90E-50

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.447
	SRR3591706	second leaf	2.021
	SRR3591707	mature leaf	0.369
	SRR3591708	Shoot apex	6.140
	SRR3591709	Stem	6.398
	SRR3591710	White floral bud	2.110
	SRR3591711	White flower	1.274
	SRR3591712	Green floral bud	3.678
	SRR3591713	Yellow flower	1.358
SRP173429	SRR8316895	Juvenile bud stage	9.884
	SRR8316896	Juvenile bud stage	8.242
	SRR8316897	Juvenile bud stage	6.301
	SRR8316894	Third green stage	2.278
	SRR8316900	Third green stage	4.661
	SRR8316901	Third green stage	8.943
	SRR8316898	Complete white stage	1.303
	SRR8316899	Complete white stage	17.826
	SRR8316903	Complete white stage	1.755
	SRR8316902	Silver flowering stage	0.464
	SRR8316904	Silver flowering stage	0.276
	SRR8316905	Silver flowering stage	0.396
	SRR8316906	Gold flowering stage	1.712
	SRR8316907	Gold flowering stage	0.625
	SRR8316908	Gold flowering stage	1.513
SRP132670	SRR6706286	Control	2.749
	SRR6706287	Light intensity 50%	3.229
	SRR6706288	Light intensity 20%	3.520
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.047
	CNS0095593	Slightly white alabastrum(diploid) 2	13.416
	CNS0095594	Slightly white alabastrum(diploid) 3	10.466
	CNS0095595	Whole white alabastrum(diploid) 2	4.223
	CNS0095596	Whole white alabastrum(diploid) 3	3.619
	CNS0095597	Whole white alabastrum(diploid) 4	4.585
	CNS0095598	Silvery flower (diploied) 1	8.754
	CNS0095599	Silvery flower (diploied) 2	7.841
	CNS0095600	Silvery flower (diploied) 3	4.246
	CNS0095601	Golden flower (diploid) 1	12.434
	CNS0095602	Golden flower (diploid) 2	5.630
	CNS0095603	Golden flower (diploid) 3	5.720
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.625
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.547
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.665
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.605
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.820
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.892
	CNS0095610	Silvery flower (tetraploid) 1	0.492
	CNS0095611	Silvery flower (tetraploid) 2	0.747
	CNS0095612	Silvery flower (tetraploid) 3	1.262
	CNS0095613	Golden flower (tetraploid) 1	0.571
	CNS0095614	Golden flower (tetraploid) 2	0.748
	CNS0095615	Golden flower (tetraploid) 3	0.259
CRA001975	CRR073297	Stem 1	5.421
	CRR073298	Stem 2	4.455
	CRR073299	Stem 3	6.930
	CRR073300	Leaf 1	6.180
	CRR073301	Leaf 2	10.415
	CRR073302	Leaf 3	3.595
	CRR073303	Juvenile bud 1	5.398
	CRR073304	Juvenile bud 2	7.530
	CRR073305	Juvenile bud 3	7.624
	CRR073306	Third green 1	2.118
	CRR073307	Third green 2	2.787
	CRR073308	Third green 3	1.906
	CRR073309	Second white 1	1.384
	CRR073310	Second white 2	0.672
	CRR073311	Second white 3	0.665
	CRR073312	Silver flowering 1	1.033
	CRR073313	Silver flowering 2	0.324
	CRR073314	Silver flowering 3	0.707
	CRR073315	Gold flowering 1	4.515
	CRR073316	Gold flowering 2	3.172
	CRR073317	Gold flowering 3	3.469
	CRR073318	Tawny withering 1	10.527
	CRR073319	Tawny withering 2	10.590
	CRR073320	Tawny withering 3	15.850