Gene detail

Detail information of GWHGAAZE011289

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264074.1	9.23642E-88	PREDICTED: putative F-box protein PP2-B12 [Nelumbo nucifera]
Swissprot	tr\|Q9ZVQ6\|P2B10_ARATH	8E-63	F-box protein PP2-B10
trEMBL	tr\|A0A068TT44\|A0A068TT44_COFCA	2E-82	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99431.1}
TAIR10	AT2G02360.1	2E-52	phloem protein 2-B10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	55686372	55690876	+
GWHAAZE00000003	mRNA	55686372	55690876	+
GWHAAZE00000003	exon	55686372	55686638	+
GWHAAZE00000003	exon	55688805	55688923	+
GWHAAZE00000003	exon	55690417	55690876	+
GWHAAZE00000003	CDS	55686372	55686638	+
GWHAAZE00000003	CDS	55688805	55688923	+
GWHAAZE00000003	CDS	55690417	55690876	+

Transcript Sequence
>GWHTAAZE011301 ATGGAGGCGGCGAGTATCTCGAAGTTGCCGGAGGTATGCATTTCGGAGATTCTATCGCTTACATCGCCTCGGGATGCGTGCAGATCATCCGCGATTTCATCGGGATTCAAATCAGCGGCTGATGCCGATGCCGTGTGGCACCGATTCCTGCCGCCCGATTACCTCGAGATCCTTGCACGATCTGATTCTCCTGTGGTCTACTCCACCAAAAAGCAACTCTATTTCCTCCTCTGCGACTCTCTTGTTCCGCTTGACGGTGGCAAATTGAGATTCATGCTAGATAAAAGGAGTGGGAAGAAATGTTATATGCTGCGATCAAGGGAGCTTTCAATTGCATGGAAGGATGATGAAGCATACTGGAATTGGCCATCTATACTTGGATCAAGCTTTACAGAGGTGGCCATGCTTCAATCCGTGCGTTGGCTAGATATTAAAGGTAAGATAGAAACTCGAATGCTATCGCCAGTGACTACCTATGCAGCATACCTTGTGTACAAATTGGCCACAAATGCCCACGATCTCATTGGCCCAGTAAAGACATCGGTTAGGTATCTAGGGGATGAAGTGGAACCCAAGGCCACCGTTGTTTATCTAAAAGAACAGGTGAACATGCCGGATATATTTCTAGGACATAGTAGTGTCCTCAGAGGGCCTGTTTCGCAGCTTCCTAAGGAAAGAACTGACGGTTGGTTGGAGATTGAACTCGGGGAGTTTTTCAGTGATCGTGGTGAAGTGGAGATGCGATTGTGGGAGACTGATTTTCATCATTGGAAATCTGGCTTAATTGTTGAAGGCATTGAAGTTCGACCAAAAGAGAAGGTTGCTGCCAGTAGGGACGCCAATTAA

Network for GWHGAAZE011289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	49	6.80E-05
PF14299.7	PP2	99	270	9.30E-51

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.965
	SRR3591706	second leaf	2.722
	SRR3591707	mature leaf	0.390
	SRR3591708	Shoot apex	12.743
	SRR3591709	Stem	6.585
	SRR3591710	White floral bud	0.207
	SRR3591711	White flower	0.072
	SRR3591712	Green floral bud	0.352
	SRR3591713	Yellow flower	0.093
SRP173429	SRR8316895	Juvenile bud stage	10.146
	SRR8316896	Juvenile bud stage	10.060
	SRR8316897	Juvenile bud stage	1.477
	SRR8316894	Third green stage	4.993
	SRR8316900	Third green stage	16.565
	SRR8316901	Third green stage	13.365
	SRR8316898	Complete white stage	4.280
	SRR8316899	Complete white stage	26.676
	SRR8316903	Complete white stage	4.547
	SRR8316902	Silver flowering stage	1.410
	SRR8316904	Silver flowering stage	1.700
	SRR8316905	Silver flowering stage	0.713
	SRR8316906	Gold flowering stage	1.803
	SRR8316907	Gold flowering stage	2.234
	SRR8316908	Gold flowering stage	1.607
SRP132670	SRR6706286	Control	17.138
	SRR6706287	Light intensity 50%	17.893
	SRR6706288	Light intensity 20%	19.144
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.709
	CNS0095593	Slightly white alabastrum(diploid) 2	12.471
	CNS0095594	Slightly white alabastrum(diploid) 3	13.345
	CNS0095595	Whole white alabastrum(diploid) 2	10.895
	CNS0095596	Whole white alabastrum(diploid) 3	11.690
	CNS0095597	Whole white alabastrum(diploid) 4	8.593
	CNS0095598	Silvery flower (diploied) 1	5.387
	CNS0095599	Silvery flower (diploied) 2	4.903
	CNS0095600	Silvery flower (diploied) 3	2.490
	CNS0095601	Golden flower (diploid) 1	4.548
	CNS0095602	Golden flower (diploid) 2	3.756
	CNS0095603	Golden flower (diploid) 3	2.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.135
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.057
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.314
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.272
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.547
	CNS0095610	Silvery flower (tetraploid) 1	2.746
	CNS0095611	Silvery flower (tetraploid) 2	2.799
	CNS0095612	Silvery flower (tetraploid) 3	3.512
	CNS0095613	Golden flower (tetraploid) 1	0.772
	CNS0095614	Golden flower (tetraploid) 2	1.956
	CNS0095615	Golden flower (tetraploid) 3	0.842
CRA001975	CRR073297	Stem 1	20.558
	CRR073298	Stem 2	19.685
	CRR073299	Stem 3	17.375
	CRR073300	Leaf 1	21.969
	CRR073301	Leaf 2	21.039
	CRR073302	Leaf 3	29.002
	CRR073303	Juvenile bud 1	24.039
	CRR073304	Juvenile bud 2	23.304
	CRR073305	Juvenile bud 3	20.963
	CRR073306	Third green 1	6.679
	CRR073307	Third green 2	7.822
	CRR073308	Third green 3	4.590
	CRR073309	Second white 1	4.011
	CRR073310	Second white 2	2.761
	CRR073311	Second white 3	2.365
	CRR073312	Silver flowering 1	0.662
	CRR073313	Silver flowering 2	2.392
	CRR073314	Silver flowering 3	0.574
	CRR073315	Gold flowering 1	4.781
	CRR073316	Gold flowering 2	5.204
	CRR073317	Gold flowering 3	4.416
	CRR073318	Tawny withering 1	29.489
	CRR073319	Tawny withering 2	21.891
	CRR073320	Tawny withering 3	33.612