Gene detail

Detail information of GWHGAAZE011291

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264074.1	2.69675E-87	PREDICTED: putative F-box protein PP2-B12 [Nelumbo nucifera]
Swissprot	tr\|Q9ZVQ6\|P2B10_ARATH	2E-64	F-box protein PP2-B10
trEMBL	tr\|A0A068TT44\|A0A068TT44_COFCA	5E-84	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99431.1}
TAIR10	AT5G24560.1	3E-50	phloem protein 2-B12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	55745522	55749923	+
GWHAAZE00000003	mRNA	55745522	55749923	+
GWHAAZE00000003	exon	55745522	55745788	+
GWHAAZE00000003	exon	55748430	55748548	+
GWHAAZE00000003	exon	55749464	55749923	+
GWHAAZE00000003	CDS	55745522	55745788	+
GWHAAZE00000003	CDS	55748430	55748548	+
GWHAAZE00000003	CDS	55749464	55749923	+

Transcript Sequence
>GWHTAAZE011303 ATGGACGCGGCGAGCATCTCCAAGTTGCCGGAGGGATGCATTTCGGAGATTCTTTCGCTTACATCGCCTCGGGATACGTGCAGATCATCCGCGATTTCATCGGGATTCAAATCCGCTGCTGATGCTGATGCCGTGTGGCACCGATTCCTGCCGTCCGATTACCTCGAGATCCTTGCACGATCTGATTCTCCTGTGGTCTATTCCACCAAAAAGCAACTCTATTTCCTCCTCTGCGACTCACTTGTTCTGCTTGACGGTGGCAAATTGAGATTCATGTTAGATAAAAGGAGTGGGAAGAAATGTTATATGTTGCCATCAAGGGAGCTTTCAATTGCATGGAAGGATGATGAATCATACTGGAATTGGCCATCTATACCTGGATCAAGGTTTACAGAGGTGGCCATGCTTCAATCCGTGTGTCGGCTAGATATTAAAGGTAAGATAGACACTCGAATGCTATCACCAGTGACTACCTATGCAGCATACCTCGTGTACAAATTGGGCACACATGCCCGCGATCTCATTGGCCCAGTAAAGACATCGGTTAGGTTTCTAGGGGATGAAGTGCAACCAGAGGCCACCGTTGTTTATCTAAAAGAACAGGTGAACATGCCGGATATATTTCTAGGACATAGACGTGTCCTCAGAGGGCCTGTTTTGCGGCTTCCTCGGGAAAGAACTGAAGGTTGGTTGGAGATTGAACTCGGGGAGTTTTTCAGTAATCATGGTGAAGTGGAGATGCGATTATGGGAGACCGATTTTCTTCATTGGAAATATGGCTTAATTGTTGAAGGCATTGAAGTTCGGCCAAAAGAGAAGGTTGCTACCTGTAGAGATGCCAATTAA

Network for GWHGAAZE011291

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14299.7	PP2	99	270	6.60E-50

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.056
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.312
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.008
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.286
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.052
	SRR8316901	Third green stage	0.019
	SRR8316898	Complete white stage	0.091
	SRR8316899	Complete white stage	0.244
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.071
	SRR8316904	Silver flowering stage	0.121
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.117
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.041
	SRR6706288	Light intensity 20%	0.029
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.102
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.022
	CNS0095596	Whole white alabastrum(diploid) 3	0.010
	CNS0095597	Whole white alabastrum(diploid) 4	0.111
	CNS0095598	Silvery flower (diploied) 1	0.090
	CNS0095599	Silvery flower (diploied) 2	1.332
	CNS0095600	Silvery flower (diploied) 3	0.153
	CNS0095601	Golden flower (diploid) 1	0.847
	CNS0095602	Golden flower (diploid) 2	0.678
	CNS0095603	Golden flower (diploid) 3	0.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.010
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.160
	CNS0095610	Silvery flower (tetraploid) 1	0.214
	CNS0095611	Silvery flower (tetraploid) 2	0.394
	CNS0095612	Silvery flower (tetraploid) 3	0.908
	CNS0095613	Golden flower (tetraploid) 1	0.388
	CNS0095614	Golden flower (tetraploid) 2	0.237
	CNS0095615	Golden flower (tetraploid) 3	0.398
CRA001975	CRR073297	Stem 1	0.055
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.129
	CRR073302	Leaf 3	0.120
	CRR073303	Juvenile bud 1	0.019
	CRR073304	Juvenile bud 2	0.061
	CRR073305	Juvenile bud 3	0.182
	CRR073306	Third green 1	0.651
	CRR073307	Third green 2	1.186
	CRR073308	Third green 3	0.848
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	1.057
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.631
	CRR073313	Silver flowering 2	0.127
	CRR073314	Silver flowering 3	0.642
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.088
	CRR073319	Tawny withering 2	0.826
	CRR073320	Tawny withering 3	0.407