Gene detail

Detail information of GWHGAAZE011305

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006489791.1	0	PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like isoform X1 [Citrus sinensis]
trEMBL	tr\|V4S0S2\|V4S0S2_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR33852.1}
TAIR10	AT3G24200.2	9E-173	FAD/NAD(P)-binding oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	56542537	56551621	+
GWHAAZE00000003	mRNA	56542537	56551621	+
GWHAAZE00000003	exon	56542537	56542552	+
GWHAAZE00000003	exon	56542677	56542820	+
GWHAAZE00000003	exon	56543563	56543621	+
GWHAAZE00000003	exon	56547625	56547692	+
GWHAAZE00000003	exon	56547781	56547832	+
GWHAAZE00000003	exon	56549347	56549520	+
GWHAAZE00000003	exon	56550729	56551307	+
GWHAAZE00000003	exon	56551406	56551621	+
GWHAAZE00000003	CDS	56542537	56542552	+
GWHAAZE00000003	CDS	56542677	56542820	+
GWHAAZE00000003	CDS	56543563	56543621	+
GWHAAZE00000003	CDS	56547625	56547692	+
GWHAAZE00000003	CDS	56547781	56547832	+
GWHAAZE00000003	CDS	56549347	56549520	+
GWHAAZE00000003	CDS	56550729	56551307	+
GWHAAZE00000003	CDS	56551406	56551621	+

Transcript Sequence
>GWHTAAZE011317 ATGACACCTCATAAAGCAAGCACGCCTTTGACGAAACACTTGAAAATTGCCATCATTGATAGCAATCCGGCTTTGGTGAGTGGAGCCTCCATTAACAAAGATGATCCCCCAAATCCAAGGGTCAGTACAGTCACACCTACAACTATTTCTCTCTTCAAAGATGTTGGGGCCTGGCAATATGTGGAACAACATCGACATGCTTATTTTGATCGGATGCAGGTCTGGGATTATACTGGGCTCGGATACACAAGATACAATGCACAAGATGTAGATAAAGACGTACTAGGGTGCGTTGTGGAGAATAAGGTGCTTCATAGATCTCTGTTGTCATGCATGCAGAACACAGAGATGCAGAACAAAATCTACCCTTCCAGATTAGCTTCAATGACTTTGAGTCCTAGCTCTTCATCGGTGGCATTGAATGACACATCATCAAGGACCACGTTGCAGACTCGTGGAAATTTAGCAAAGCTGGAGCTGAGTGATGGAAATCATTTGTATGCAAAGTTGGTGGTTGGAGCTGATGGGTCCAAGTCACACGTTCGCGAACTAGCCAGAATTAAAACTACAGGATGGAAATACTCCCAAAATGCACTCATCTGTACTGTCCAACACAAAGAGGAAAACCCTTGTGCATGGCAACGTTTTCTACCTGCGGGCCCAATCGCACTTCTACCAATGGGTGACAACTTCAGCAACATTGTTTGGACTATGGATCCCAAAGATTCATCAAACCTCAAGTCGATGAACGAAGATGATTTTGTGAAAGCAGTAAACCATGCTTTGGATCACGGGTACGGTCCACATCCTCAATCAAAATTATTTGGCGGGGACGTATTTTCTTGGATCAAGGGAGATTATGGGGTTTCTTCATCAAAGGAGTCTTTTGAGGTTCCACCAAAAGCAGTGAAGTTGGGGTCGGAGAGAATGGCGTTTCCGTTGTCTTTAATGCATGCTAATAGTTATGCCTTGAAGCGTGTTGTTTTGGTTGGTGATGCGGCACACACTGTTCATCCTTTGGCTGGTCAAGGAGTTAATATGGGTTTTGGAGATGCATTATCTCTTTCGAGAGTTATTGCTGATGGTATCGCAATATCTCTGCTGAAGAATTATGAAGCAGATAGGAAAATGGCCAACGTTGCAATGATGGCAATACTGGATGGTTTCCAAAAGGCATACTCTGTTGATTTTGGTCCACTCAATGCGTTGAGAGCCGCTGCTTTCCATGGCGCTCAGTACATTGCGCCTCTTAAACGGAACATTATCTCGTATGCATCAGGCGAGCAGAGAATCCCACTTCTCTCGTAG

Network for GWHGAAZE011305

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01494.20	FAD_binding_3	36	261	2.40E-06
PF01494.20	FAD_binding_3	310	381	6.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06126	COQ6	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0006744	biological_process	ubiquinone biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016709	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0003824	molecular_function	catalytic activity
GO:0071949	molecular_function	FAD binding
GO:0004497	molecular_function	monooxygenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.447
	SRR3591706	second leaf	2.549
	SRR3591707	mature leaf	2.736
	SRR3591708	Shoot apex	5.349
	SRR3591709	Stem	6.120
	SRR3591710	White floral bud	1.350
	SRR3591711	White flower	1.303
	SRR3591712	Green floral bud	1.379
	SRR3591713	Yellow flower	1.220
SRP173429	SRR8316895	Juvenile bud stage	8.717
	SRR8316896	Juvenile bud stage	13.295
	SRR8316897	Juvenile bud stage	21.125
	SRR8316894	Third green stage	4.836
	SRR8316900	Third green stage	14.309
	SRR8316901	Third green stage	14.815
	SRR8316898	Complete white stage	3.414
	SRR8316899	Complete white stage	7.930
	SRR8316903	Complete white stage	5.691
	SRR8316902	Silver flowering stage	6.022
	SRR8316904	Silver flowering stage	6.728
	SRR8316905	Silver flowering stage	4.313
	SRR8316906	Gold flowering stage	12.718
	SRR8316907	Gold flowering stage	13.028
	SRR8316908	Gold flowering stage	23.081
SRP132670	SRR6706286	Control	7.100
	SRR6706287	Light intensity 50%	8.970
	SRR6706288	Light intensity 20%	8.329
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.003
	CNS0095593	Slightly white alabastrum(diploid) 2	11.520
	CNS0095594	Slightly white alabastrum(diploid) 3	10.418
	CNS0095595	Whole white alabastrum(diploid) 2	8.838
	CNS0095596	Whole white alabastrum(diploid) 3	9.702
	CNS0095597	Whole white alabastrum(diploid) 4	10.426
	CNS0095598	Silvery flower (diploied) 1	4.805
	CNS0095599	Silvery flower (diploied) 2	6.084
	CNS0095600	Silvery flower (diploied) 3	4.752
	CNS0095601	Golden flower (diploid) 1	5.378
	CNS0095602	Golden flower (diploid) 2	4.904
	CNS0095603	Golden flower (diploid) 3	4.025
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.691
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.226
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.074
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.891
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.537
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.984
	CNS0095610	Silvery flower (tetraploid) 1	9.390
	CNS0095611	Silvery flower (tetraploid) 2	9.011
	CNS0095612	Silvery flower (tetraploid) 3	6.815
	CNS0095613	Golden flower (tetraploid) 1	4.779
	CNS0095614	Golden flower (tetraploid) 2	4.870
	CNS0095615	Golden flower (tetraploid) 3	2.919
CRA001975	CRR073297	Stem 1	13.542
	CRR073298	Stem 2	11.999
	CRR073299	Stem 3	12.750
	CRR073300	Leaf 1	13.605
	CRR073301	Leaf 2	13.877
	CRR073302	Leaf 3	8.927
	CRR073303	Juvenile bud 1	9.389
	CRR073304	Juvenile bud 2	5.689
	CRR073305	Juvenile bud 3	7.506
	CRR073306	Third green 1	4.315
	CRR073307	Third green 2	4.047
	CRR073308	Third green 3	6.079
	CRR073309	Second white 1	6.098
	CRR073310	Second white 2	4.260
	CRR073311	Second white 3	3.145
	CRR073312	Silver flowering 1	3.168
	CRR073313	Silver flowering 2	3.795
	CRR073314	Silver flowering 3	4.475
	CRR073315	Gold flowering 1	6.144
	CRR073316	Gold flowering 2	6.067
	CRR073317	Gold flowering 3	8.250
	CRR073318	Tawny withering 1	7.557
	CRR073319	Tawny withering 2	8.760
	CRR073320	Tawny withering 3	7.802