Gene detail

Detail information of GWHGAAZE011320

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264074.1	3.07072E-87	PREDICTED: putative F-box protein PP2-B12 [Nelumbo nucifera]
Swissprot	tr\|O80494\|P2B15_ARATH	1E-61	F-box protein PP2-B15
trEMBL	tr\|A0A022Q2C7\|A0A022Q2C7_ERYGU	8E-81	Uncharacterized protein {ECO:0000313\|EMBL:EYU22101.1}
TAIR10	AT1G09155.1	1E-51	phloem protein 2-B15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	56891795	56896280	+
GWHAAZE00000003	mRNA	56891795	56896280	+
GWHAAZE00000003	exon	56891795	56892061	+
GWHAAZE00000003	exon	56894219	56894337	+
GWHAAZE00000003	exon	56895821	56896280	+
GWHAAZE00000003	CDS	56891795	56892061	+
GWHAAZE00000003	CDS	56894219	56894337	+
GWHAAZE00000003	CDS	56895821	56896280	+

Transcript Sequence
>GWHTAAZE011332 ATGGAGGCGGCGAGTATCTCGAAGTTGCCGGAGGTATGCATTTCGGAGATTCTATCGCTTACATCGCCTCGGGATGCGTGCAGATCATCCGCGATTTCATCGGGATTCAAATCAGCGGCTGATGCCGATGCCGTGTGGCACCGATTCCTGCCGCCCGATTACCTCGAGATCCTTGCACGATCTGATTCTCCTGTGGTCTACTCCACCAAAAAGCAACTCTATTTCCTCCTCTGCGACTCTCTTGTTCCGCTTGACGGTGGCAAATTGAGATTCATGCTAGATAAAAGGAGTGGGAAGAAATGTTATATGCTGCGATCAAGGGAGCTTTCAATTGCATGGAAGGATGATGAAGCACACTGGAATTGGCCATCTATACTTGGATCAAGGTTTACAGAGGTGGCCATGCTTCAATCCGTGCGTTGGCTAGATATTAAAGGTAAGATAGAAACTCGAATGCTATCGCCAGTGACTACCTATGCAGCATACCTCGTGTACAAATTGGCCACAAATGCCCGTGATCTCATTGGCCCAGTAAAGACATCGGTTAGGTATCTAGGGGATGAAGTGGAACCCGAGGCCACCGTTGTTTATCTCAAAGAACAGGTGGACATGCCGGATATATTTCTAGGACATAGTCGTGTCCTCAGAGGGCCTGTTTCACGGCTTCCTCAGGAAAGAACTGACGGTTGGTTGGAGATTGAACTCGGGGAGTTTTTCAGTGATCGTGGTGAAGTGGAGATGCGATTGTGGGAGACTGATTTTCATCATTGGAAATCTGGCTTAATTGTTGAAGGCATTGAAGTTCGGCCAAAAGAGGAGGTTGCTGCCAGTAGAGACGCCAACTAA

Network for GWHGAAZE011320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	49	6.80E-05
PF14299.7	PP2	99	270	5.80E-50

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.014
	SRR3591706	second leaf	1.409
	SRR3591707	mature leaf	0.227
	SRR3591708	Shoot apex	5.012
	SRR3591709	Stem	3.469
	SRR3591710	White floral bud	0.180
	SRR3591711	White flower	0.250
	SRR3591712	Green floral bud	0.352
	SRR3591713	Yellow flower	0.093
SRP173429	SRR8316895	Juvenile bud stage	4.581
	SRR8316896	Juvenile bud stage	6.237
	SRR8316897	Juvenile bud stage	9.330
	SRR8316894	Third green stage	2.703
	SRR8316900	Third green stage	9.340
	SRR8316901	Third green stage	9.992
	SRR8316898	Complete white stage	2.359
	SRR8316899	Complete white stage	15.761
	SRR8316903	Complete white stage	5.588
	SRR8316902	Silver flowering stage	1.905
	SRR8316904	Silver flowering stage	2.484
	SRR8316905	Silver flowering stage	0.983
	SRR8316906	Gold flowering stage	3.612
	SRR8316907	Gold flowering stage	2.325
	SRR8316908	Gold flowering stage	4.667
SRP132670	SRR6706286	Control	15.431
	SRR6706287	Light intensity 50%	17.312
	SRR6706288	Light intensity 20%	17.160
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.902
	CNS0095593	Slightly white alabastrum(diploid) 2	6.763
	CNS0095594	Slightly white alabastrum(diploid) 3	4.478
	CNS0095595	Whole white alabastrum(diploid) 2	5.823
	CNS0095596	Whole white alabastrum(diploid) 3	6.853
	CNS0095597	Whole white alabastrum(diploid) 4	5.813
	CNS0095598	Silvery flower (diploied) 1	4.318
	CNS0095599	Silvery flower (diploied) 2	4.120
	CNS0095600	Silvery flower (diploied) 3	3.483
	CNS0095601	Golden flower (diploid) 1	3.973
	CNS0095602	Golden flower (diploid) 2	2.609
	CNS0095603	Golden flower (diploid) 3	2.910
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.350
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.270
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.392
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.691
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.972
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.776
	CNS0095610	Silvery flower (tetraploid) 1	0.860
	CNS0095611	Silvery flower (tetraploid) 2	1.077
	CNS0095612	Silvery flower (tetraploid) 3	1.126
	CNS0095613	Golden flower (tetraploid) 1	0.222
	CNS0095614	Golden flower (tetraploid) 2	0.335
	CNS0095615	Golden flower (tetraploid) 3	0.060
CRA001975	CRR073297	Stem 1	11.963
	CRR073298	Stem 2	12.882
	CRR073299	Stem 3	9.926
	CRR073300	Leaf 1	19.056
	CRR073301	Leaf 2	15.582
	CRR073302	Leaf 3	15.142
	CRR073303	Juvenile bud 1	18.841
	CRR073304	Juvenile bud 2	11.379
	CRR073305	Juvenile bud 3	14.494
	CRR073306	Third green 1	4.301
	CRR073307	Third green 2	4.454
	CRR073308	Third green 3	3.759
	CRR073309	Second white 1	3.619
	CRR073310	Second white 2	1.609
	CRR073311	Second white 3	1.616
	CRR073312	Silver flowering 1	0.587
	CRR073313	Silver flowering 2	1.248
	CRR073314	Silver flowering 3	0.734
	CRR073315	Gold flowering 1	1.000
	CRR073316	Gold flowering 2	2.342
	CRR073317	Gold flowering 3	1.805
	CRR073318	Tawny withering 1	10.763
	CRR073319	Tawny withering 2	11.365
	CRR073320	Tawny withering 3	12.853