Gene detail

Detail information of GWHGAAZE011343

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004247828.1	PREDICTED: 3-ketoacyl-CoA thiolase 2, peroxisomal [Solanum lycopersicum]
Swissprot	tr\|Q56WD9\|THIK2_ARATH	3-ketoacyl-CoA thiolase 2, peroxisomal (Precursor)
trEMBL	tr\|K4CWH3\|K4CWH3_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc09g091470.2.1}
TAIR10	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	58128111	58135693	+
GWHAAZE00000003	mRNA	58128111	58135693	+
GWHAAZE00000003	exon	58128111	58128122	+
GWHAAZE00000003	exon	58128696	58128772	+
GWHAAZE00000003	exon	58128877	58128961	+
GWHAAZE00000003	exon	58129308	58129434	+
GWHAAZE00000003	exon	58129531	58129629	+
GWHAAZE00000003	exon	58129725	58129780	+
GWHAAZE00000003	exon	58129886	58129993	+
GWHAAZE00000003	exon	58130090	58130161	+
GWHAAZE00000003	exon	58130271	58130403	+
GWHAAZE00000003	exon	58130488	58130584	+
GWHAAZE00000003	exon	58133216	58133339	+
GWHAAZE00000003	exon	58133698	58133806	+
GWHAAZE00000003	exon	58135269	58135352	+
GWHAAZE00000003	exon	58135584	58135693	+
GWHAAZE00000003	CDS	58128111	58128122	+
GWHAAZE00000003	CDS	58128696	58128772	+
GWHAAZE00000003	CDS	58128877	58128961	+
GWHAAZE00000003	CDS	58129308	58129434	+
GWHAAZE00000003	CDS	58129531	58129629	+
GWHAAZE00000003	CDS	58129725	58129780	+
GWHAAZE00000003	CDS	58129886	58129993	+
GWHAAZE00000003	CDS	58130090	58130161	+
GWHAAZE00000003	CDS	58130271	58130403	+
GWHAAZE00000003	CDS	58130488	58130584	+
GWHAAZE00000003	CDS	58133216	58133339	+
GWHAAZE00000003	CDS	58133698	58133806	+
GWHAAZE00000003	CDS	58135269	58135352	+
GWHAAZE00000003	CDS	58135584	58135693	+

Transcript Sequence
>GWHTAAZE011355 ATGAGGAATTTTGCATCCATCTGTTCAGCTGGAAGTAGTTCTGCATATCAAAGGACTTCTGTTTTTGGAGATGATGTAGTCATTGTAGCTGCATATCGGACTCCACTTTGCAAGTCCAAGAGGGGTGGTTTCAAAGATACTTATCCTGATGACTTACTAGCACCAGTTTTGAGGGGAGTGATAGAGAAAACAAATGTGAACCCTAGTGAAGTTGGAGACATTGTTGTGGGTACAGTTTTGGCACCAGGCTCCCAAAGAGCAAGTGAATGCAGGATGGCTGCATTTTATGCTGGTTTTCCTGAAACTGTGCCTATTAGAACTGTGAACAGGCAGTGTTCATCAGGTCTTCAAGCAGTAGCTGACGTAGCTGCGGCTATCAAAGCTGGATTTTATGACATTGGGATTGGTGCTGGGTTGGAATCCATGACCACAAACCCGATGGCATGGGAAGGATCAGTAAAGGAAATGGCAAAAGCCCAAGATTGTCTTCTACCAATGGGTGTGACTTCAGAAAATGTTGCACATCGTTTTGGTGTAACAAGAGAGGAACAAGATCAGGCTGCGTCGCATAGAAAGGCTGCTGCCGCAACTGCTTCTGGAAAATTTAAGGACGAGATAATACCTGTGAACACCAAGATAGTTGACCCAAAAACTGGAGATGAAAAACCTGTTACAATCTCTGTCGATGATGGCATTCGGCCTAACACAACATTGGCAGATCTTGCAAAGTTGAAGACCGTATTTAAGAAAGACGGTACTACCACTGCTGGAAATTCTAGCCAAGTGACTGATGGTGCTGGAGCTGTCCTCCTCATGAAGAGGAGTGTTGCTATGCAAAAAGGGTTACCGATTCTTGGTGTATTTAGGACTTTTGCTGCTGTTGGCGTAGACCCTGATATCATGGGTGTTGGTCCAGCTGTTGCAATTCCAGCTGCAGTTAAGTCTGCTGGTCTTGAACTTGATGACATTGACCTTTTTGAGATAAATGAGGCGTTTGCATCCCAATTTGTGTATTGCCGTAAGAAGCTAGAGCTCGATCCAGAGAAGGTCAATGTGAATGGAGGTGCAATGGCCATTGGGCATCCTTTGGGTGCAACAGGAGCTCGATGTATTGCCACTCTATTGCATGAGATGAAGCGTCGTGGCAAAGACTGCCGTTTTGGCGTGATTTCTATGTGCATTGGCACGGGAATGGGGGCAGCTGCAGTTTTCGAAAGAGGGGACTTGTGTGATGAGCTTTGCAATAGCCGACAAATTGAGACAGTCAATCTTTTATCTAAGGATGCGAGGTAG

Network for GWHGAAZE011343

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00108.24	Thiolase_N	26	275	2.10E-75
PF02803.19	Thiolase_C	284	406	1.20E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07513	ACAA1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Biosynthesis of unsaturated fatty acids	map01040
		Valine, leucine and isoleucine degradation	map00280
		Peroxisome	map04146
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	117.353
	SRR3591706	second leaf	58.651
	SRR3591707	mature leaf	54.609
	SRR3591708	Shoot apex	55.794
	SRR3591709	Stem	139.495
	SRR3591710	White floral bud	147.397
	SRR3591711	White flower	296.230
	SRR3591712	Green floral bud	139.264
	SRR3591713	Yellow flower	971.457
SRP173429	SRR8316895	Juvenile bud stage	60.413
	SRR8316896	Juvenile bud stage	100.769
	SRR8316897	Juvenile bud stage	50.758
	SRR8316894	Third green stage	42.592
	SRR8316900	Third green stage	138.234
	SRR8316901	Third green stage	136.898
	SRR8316898	Complete white stage	83.439
	SRR8316899	Complete white stage	126.300
	SRR8316903	Complete white stage	114.583
	SRR8316902	Silver flowering stage	96.547
	SRR8316904	Silver flowering stage	130.557
	SRR8316905	Silver flowering stage	73.454
	SRR8316906	Gold flowering stage	254.232
	SRR8316907	Gold flowering stage	241.818
	SRR8316908	Gold flowering stage	297.274
SRP132670	SRR6706286	Control	139.549
	SRR6706287	Light intensity 50%	131.355
	SRR6706288	Light intensity 20%	125.883
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	90.122
	CNS0095593	Slightly white alabastrum(diploid) 2	96.232
	CNS0095594	Slightly white alabastrum(diploid) 3	105.474
	CNS0095595	Whole white alabastrum(diploid) 2	99.816
	CNS0095596	Whole white alabastrum(diploid) 3	116.351
	CNS0095597	Whole white alabastrum(diploid) 4	111.482
	CNS0095598	Silvery flower (diploied) 1	159.231
	CNS0095599	Silvery flower (diploied) 2	172.275
	CNS0095600	Silvery flower (diploied) 3	416.387
	CNS0095601	Golden flower (diploid) 1	311.515
	CNS0095602	Golden flower (diploid) 2	654.784
	CNS0095603	Golden flower (diploid) 3	633.914
	CNS0095604	Slightly white alabastrum(tetraploid) 1	98.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	88.423
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.709
	CNS0095607	Whole white alabastrum(tetraploid) 1	122.868
	CNS0095608	Whole white alabastrum(tetraploid) 2	139.353
	CNS0095609	Whole white alabastrum(tetraploid) 3	125.958
	CNS0095610	Silvery flower (tetraploid) 1	347.900
	CNS0095611	Silvery flower (tetraploid) 2	365.604
	CNS0095612	Silvery flower (tetraploid) 3	330.440
	CNS0095613	Golden flower (tetraploid) 1	531.947
	CNS0095614	Golden flower (tetraploid) 2	545.158
	CNS0095615	Golden flower (tetraploid) 3	826.352
CRA001975	CRR073297	Stem 1	114.272
	CRR073298	Stem 2	115.596
	CRR073299	Stem 3	135.113
	CRR073300	Leaf 1	142.462
	CRR073301	Leaf 2	137.655
	CRR073302	Leaf 3	161.216
	CRR073303	Juvenile bud 1	188.997
	CRR073304	Juvenile bud 2	219.050
	CRR073305	Juvenile bud 3	155.695
	CRR073306	Third green 1	238.670
	CRR073307	Third green 2	271.834
	CRR073308	Third green 3	206.314
	CRR073309	Second white 1	414.763
	CRR073310	Second white 2	313.834
	CRR073311	Second white 3	249.856
	CRR073312	Silver flowering 1	350.519
	CRR073313	Silver flowering 2	366.442
	CRR073314	Silver flowering 3	407.965
	CRR073315	Gold flowering 1	109.039
	CRR073316	Gold flowering 2	126.839
	CRR073317	Gold flowering 3	101.971
	CRR073318	Tawny withering 1	131.166
	CRR073319	Tawny withering 2	120.436
	CRR073320	Tawny withering 3	103.077