Gene detail

Detail information of GWHGAAZE011352

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009343156.1	1.06506E-80	PREDICTED: protein kinase APK1B, chloroplastic-like [Pyrus x bretschneideri]
Swissprot	tr\|P46573\|APK1B_ARATH	5E-28	Protein kinase APK1B, chloroplastic (Precursor)
trEMBL	tr\|W9QW66\|W9QW66_9ROSA	4E-77	Serine/threonine-protein kinase BIK1 {ECO:0000313\|EMBL:EXB40298.1}
TAIR10	AT2G28590.1	6E-25	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	58491172	58496413	+
GWHAAZE00000003	mRNA	58491172	58496413	+
GWHAAZE00000003	exon	58491172	58491274	+
GWHAAZE00000003	exon	58491773	58492014	+
GWHAAZE00000003	exon	58492108	58492267	+
GWHAAZE00000003	exon	58493723	58493850	+
GWHAAZE00000003	exon	58494825	58494948	+
GWHAAZE00000003	exon	58496049	58496413	+
GWHAAZE00000003	CDS	58491172	58491274	+
GWHAAZE00000003	CDS	58491773	58492014	+
GWHAAZE00000003	CDS	58492108	58492267	+
GWHAAZE00000003	CDS	58493723	58493850	+
GWHAAZE00000003	CDS	58494825	58494948	+
GWHAAZE00000003	CDS	58496049	58496413	+

Transcript Sequence
>GWHTAAZE011364 ATGCTTGATTTGAAATTTCGAGAACCTGAGTTGGTAAATTTGACAGCTTTTACTTTTGAACTTGCCTCCTCTTTCAAAGTAGTTTCTGGAACGAAAGCTTATGGGGCAAGGACACAAATCGACAACAATTGGTGGTGTACTAGAGAACCTATTTCATGTACATCGGACGTCTTGGAAGCATTGACTGACAATTTCAAGGAAGAAAACTTCATTGGATCAACAACCTATGGTAAGGTGTATCGAGGGAAGCTTAAGCTCAATTCAATTGGAGCTGAAACAAGGGATGTGACAGTAAAGATTTGGGATGATAAAGTAGATGTTATTGATGATGGTAAAGTGGTCGATGAAGAAGTAAAGTTCCTATCTCATTCTAATGTGAATCACCACCCCAACTTGGCGAAGTTGATAGGCTTTTCCAGCAATGGATATCGCTGCAAGGGACCAATGAATGGTGTTGTTTATGATCTCAACCCATTAGATAATTTGTATAATCACACTCCAAAAGACAATTTCTCTTGGATCGAGAGGATTAAAGTAGCCCTTGAATTTGCAAAACTCCTTGAATATCTGCATCACGGGGAACGGCCATATATGGTCTTCAATATTGATTCAACAAATATCATGCTTGATCAGGCATGCAATCCAATACTGATCGACTTTGGGTTGCTTAGTGGTGGGATTATGGGTGGAGTACGTTTTACACAGGAGTTTGGATGTATGTCACCAGGCTACTGGGACCCATATTATGCTGCAAGAGGGTTTAGGTGGATTTGGAGCGATGTGTTTTCATATGGCGTGATTTTGCTGGGCCTCATAGCTAAGAGAGTTGACTTGAAGGAGGACATGGAAAAACGCAAGTATCAAAAATTGTATCAGTGGGCTACCGAAGTGTACAAGCACGAGTGCTCGCTTGTGCACCCTAACCTAAGGGAGGACAAGGATTTTGAGGAGTCCGATGGTATCGCATTGACCAAGCTGGTGATGCGCTGTATACAAGTAAAAAATGCAGAAGAGCGCCCCACAATGAGTCAAGTTGTCAAGAGCCTCGAGAATTTAAGCGCCTTTCAAGTTCTTAGCAAGTATGCACTCAAAGACAGAAGGATGAAACTCTCGGGTAAGTGA

Network for GWHGAAZE011352

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0239

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	68	349	2.90E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.081
	SRR3591706	second leaf	3.439
	SRR3591707	mature leaf	4.000
	SRR3591708	Shoot apex	6.245
	SRR3591709	Stem	5.463
	SRR3591710	White floral bud	11.392
	SRR3591711	White flower	9.374
	SRR3591712	Green floral bud	14.491
	SRR3591713	Yellow flower	8.424
SRP173429	SRR8316895	Juvenile bud stage	5.722
	SRR8316896	Juvenile bud stage	13.855
	SRR8316897	Juvenile bud stage	3.782
	SRR8316894	Third green stage	3.949
	SRR8316900	Third green stage	14.437
	SRR8316901	Third green stage	13.184
	SRR8316898	Complete white stage	4.434
	SRR8316899	Complete white stage	11.542
	SRR8316903	Complete white stage	5.331
	SRR8316902	Silver flowering stage	4.958
	SRR8316904	Silver flowering stage	5.043
	SRR8316905	Silver flowering stage	2.855
	SRR8316906	Gold flowering stage	7.597
	SRR8316907	Gold flowering stage	9.277
	SRR8316908	Gold flowering stage	7.296
SRP132670	SRR6706286	Control	13.112
	SRR6706287	Light intensity 50%	14.071
	SRR6706288	Light intensity 20%	13.595
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.966
	CNS0095593	Slightly white alabastrum(diploid) 2	11.686
	CNS0095594	Slightly white alabastrum(diploid) 3	9.936
	CNS0095595	Whole white alabastrum(diploid) 2	14.248
	CNS0095596	Whole white alabastrum(diploid) 3	15.298
	CNS0095597	Whole white alabastrum(diploid) 4	18.015
	CNS0095598	Silvery flower (diploied) 1	11.001
	CNS0095599	Silvery flower (diploied) 2	7.640
	CNS0095600	Silvery flower (diploied) 3	8.535
	CNS0095601	Golden flower (diploid) 1	8.311
	CNS0095602	Golden flower (diploid) 2	9.671
	CNS0095603	Golden flower (diploid) 3	7.944
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.814
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.610
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.384
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.596
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.799
	CNS0095610	Silvery flower (tetraploid) 1	9.066
	CNS0095611	Silvery flower (tetraploid) 2	10.809
	CNS0095612	Silvery flower (tetraploid) 3	9.971
	CNS0095613	Golden flower (tetraploid) 1	5.921
	CNS0095614	Golden flower (tetraploid) 2	8.391
	CNS0095615	Golden flower (tetraploid) 3	4.770
CRA001975	CRR073297	Stem 1	6.955
	CRR073298	Stem 2	7.888
	CRR073299	Stem 3	6.991
	CRR073300	Leaf 1	11.937
	CRR073301	Leaf 2	11.357
	CRR073302	Leaf 3	7.278
	CRR073303	Juvenile bud 1	6.120
	CRR073304	Juvenile bud 2	6.303
	CRR073305	Juvenile bud 3	8.176
	CRR073306	Third green 1	2.549
	CRR073307	Third green 2	3.062
	CRR073308	Third green 3	3.932
	CRR073309	Second white 1	3.109
	CRR073310	Second white 2	3.936
	CRR073311	Second white 3	3.076
	CRR073312	Silver flowering 1	1.525
	CRR073313	Silver flowering 2	1.448
	CRR073314	Silver flowering 3	1.377
	CRR073315	Gold flowering 1	2.402
	CRR073316	Gold flowering 2	3.982
	CRR073317	Gold flowering 3	2.586
	CRR073318	Tawny withering 1	9.327
	CRR073319	Tawny withering 2	6.078
	CRR073320	Tawny withering 3	6.403