Gene detail

Detail information of GWHGAAZE011375

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010087987.1	4.77427E-14	TMV resistance protein N [Morus notabilis]
Swissprot	tr\|C4B7M5\|WR52W_ARATH	0.0000006	Disease resistance protein RRS1 {ECO:0000303\|PubMed:19519800}
trEMBL	tr\|W9QLS2\|W9QLS2_9ROSA	2E-14	TMV resistance protein N {ECO:0000313\|EMBL:EXB30997.1}
TAIR10	AT5G36930.1	0.0000001	Disease resistance protein (TIR-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	59089668	59091525	-
GWHAAZE00000003	mRNA	59089668	59091525	-
GWHAAZE00000003	exon	59089668	59090291	-
GWHAAZE00000003	exon	59090385	59090527	-
GWHAAZE00000003	exon	59090912	59090986	-
GWHAAZE00000003	exon	59091333	59091525	-
GWHAAZE00000003	CDS	59091333	59091525	-
GWHAAZE00000003	CDS	59090912	59090986	-
GWHAAZE00000003	CDS	59090385	59090527	-
GWHAAZE00000003	CDS	59089668	59090291	-

Transcript Sequence
>GWHTAAZE011387 ATGAACAATGTACATGTCACTGGAAGCCTTGAACATTTGTCGAATCAATTAAGGTGGATTTGCTGGCAACACTTTCCTTTGAAATGTTTAGATTCTATTTTTCATATGGGAAAGCTCGTTGTACTAGATATGCAGTACAGTAAACTCAGTACAATATGGAAAGGTAGCAAGGTACGACAGTCCGTAACCTTTTGTTGCTCCAACCTAGACAAGTTACCTGAAAATATGGGACTTCTCAAGAACCTTACAAGCTTATATGTTGATGGGTATAGTAAAAAATCTATACTCTTCAATCTTCGAGAATGTAGCTTCATTGCGAGTCATGACATGCTGAAGTTGAACTCTGTGAAAAGACTTATAATTTATCCTCACAGTGTTTTGGTTAGGAATTGCATAGATAATCTATCTCAGGCACGCACTGAGCATGTTGGCCTTCCAGGTCCAAGAAGAAAGTGTTCTATTTTATTTGATATTCCAAGAAATAAGAAGGATTTTTTTGAGTTGAAGATTCTTGCTGTTTATGAGGCCAAGAAAGATGGGTTTGTATCAACACGTGTTTCTTGGGTATTTGATCCTGATAAAGCAAGTTGCTGTCAACAGAAAGTTTGTTTTTCTCATTTCGAATCACATTACTGTGGAAAATACTATTTGGTGAGCCGAATTCCACACCATTATTGTTTGTATGAAATTGCAGGAATAGAGGTTGTCTTTGAAATAGCCCCATCGGCATCTATTGTGGTCAAGATGTGCCAACTTCAGCTTCTCCGCAGAACACCATATATGAGAGGTTTTTCAGTTGACAAAATGCAAGGGCGTAGTTATGGCTTTGATATAGTGGAGACGTGCAGCGGGTTAGCCAACAAGGACGAGGATCCGAAAAGGTTGATTATGGAGAATGAAGACCAGATGTTCAACAACAAAAGCGACACCGAGTATATACATTTGTTCGATGATAGAGTTGTTAACAACTTCATCATCAAAATAGTCAACACTGCACAAGTATTGGAAGACTTACAATTACAGGGCCGACGCTGA

Network for GWHGAAZE011375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0270

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.876
	SRR3591706	second leaf	6.908
	SRR3591707	mature leaf	10.353
	SRR3591708	Shoot apex	12.913
	SRR3591709	Stem	15.072
	SRR3591710	White floral bud	3.958
	SRR3591711	White flower	4.930
	SRR3591712	Green floral bud	10.356
	SRR3591713	Yellow flower	0.547
SRP173429	SRR8316895	Juvenile bud stage	3.469
	SRR8316896	Juvenile bud stage	3.817
	SRR8316897	Juvenile bud stage	2.213
	SRR8316894	Third green stage	1.275
	SRR8316900	Third green stage	4.313
	SRR8316901	Third green stage	3.802
	SRR8316898	Complete white stage	0.213
	SRR8316899	Complete white stage	5.473
	SRR8316903	Complete white stage	0.409
	SRR8316902	Silver flowering stage	0.358
	SRR8316904	Silver flowering stage	0.364
	SRR8316905	Silver flowering stage	0.198
	SRR8316906	Gold flowering stage	0.045
	SRR8316907	Gold flowering stage	0.060
	SRR8316908	Gold flowering stage	0.041
SRP132670	SRR6706286	Control	1.951
	SRR6706287	Light intensity 50%	1.771
	SRR6706288	Light intensity 20%	1.881
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.508
	CNS0095593	Slightly white alabastrum(diploid) 2	6.837
	CNS0095594	Slightly white alabastrum(diploid) 3	5.393
	CNS0095595	Whole white alabastrum(diploid) 2	4.525
	CNS0095596	Whole white alabastrum(diploid) 3	3.951
	CNS0095597	Whole white alabastrum(diploid) 4	4.992
	CNS0095598	Silvery flower (diploied) 1	6.832
	CNS0095599	Silvery flower (diploied) 2	4.057
	CNS0095600	Silvery flower (diploied) 3	1.360
	CNS0095601	Golden flower (diploid) 1	5.114
	CNS0095602	Golden flower (diploid) 2	2.284
	CNS0095603	Golden flower (diploid) 3	1.967
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.313
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.803
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.401
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.674
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.730
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.728
	CNS0095610	Silvery flower (tetraploid) 1	1.496
	CNS0095611	Silvery flower (tetraploid) 2	2.750
	CNS0095612	Silvery flower (tetraploid) 3	1.138
	CNS0095613	Golden flower (tetraploid) 1	0.712
	CNS0095614	Golden flower (tetraploid) 2	2.141
	CNS0095615	Golden flower (tetraploid) 3	0.090
CRA001975	CRR073297	Stem 1	1.159
	CRR073298	Stem 2	1.742
	CRR073299	Stem 3	0.331
	CRR073300	Leaf 1	1.567
	CRR073301	Leaf 2	1.919
	CRR073302	Leaf 3	0.277
	CRR073303	Juvenile bud 1	0.836
	CRR073304	Juvenile bud 2	0.420
	CRR073305	Juvenile bud 3	0.369
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.033
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.025
	CRR073310	Second white 2	0.075
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.062
	CRR073315	Gold flowering 1	1.243
	CRR073316	Gold flowering 2	1.989
	CRR073317	Gold flowering 3	0.103
	CRR073318	Tawny withering 1	0.988
	CRR073319	Tawny withering 2	1.799
	CRR073320	Tawny withering 3	2.308