Gene detail

Detail information of GWHGAAZE011479

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006340903.1	PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Solanum tuberosum]
Swissprot	tr\|Q8GS60\|HCAR_ARATH	7-hydroxymethyl chlorophyll a reductase, chloroplastic (Precursor)
trEMBL	tr\|D7TS42\|D7TS42_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33314.3}
TAIR10	AT1G04620.1	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	63006167	63016383	+
GWHAAZE00000003	mRNA	63006167	63016383	+
GWHAAZE00000003	exon	63006167	63006294	+
GWHAAZE00000003	exon	63006936	63007020	+
GWHAAZE00000003	exon	63008587	63008698	+
GWHAAZE00000003	exon	63008863	63008947	+
GWHAAZE00000003	exon	63009039	63009080	+
GWHAAZE00000003	exon	63009207	63009285	+
GWHAAZE00000003	exon	63010890	63010941	+
GWHAAZE00000003	exon	63011041	63011103	+
GWHAAZE00000003	exon	63011388	63011485	+
GWHAAZE00000003	exon	63012064	63012099	+
GWHAAZE00000003	exon	63012188	63012249	+
GWHAAZE00000003	exon	63012692	63012719	+
GWHAAZE00000003	exon	63013853	63013932	+
GWHAAZE00000003	exon	63014074	63014138	+
GWHAAZE00000003	exon	63014855	63014919	+
GWHAAZE00000003	exon	63015013	63015107	+
GWHAAZE00000003	exon	63016293	63016383	+
GWHAAZE00000003	CDS	63006167	63006294	+
GWHAAZE00000003	CDS	63006936	63007020	+
GWHAAZE00000003	CDS	63008587	63008698	+
GWHAAZE00000003	CDS	63008863	63008947	+
GWHAAZE00000003	CDS	63009039	63009080	+
GWHAAZE00000003	CDS	63009207	63009285	+
GWHAAZE00000003	CDS	63010890	63010941	+
GWHAAZE00000003	CDS	63011041	63011103	+
GWHAAZE00000003	CDS	63011388	63011485	+
GWHAAZE00000003	CDS	63012064	63012099	+
GWHAAZE00000003	CDS	63012188	63012249	+
GWHAAZE00000003	CDS	63012692	63012719	+
GWHAAZE00000003	CDS	63013853	63013932	+
GWHAAZE00000003	CDS	63014074	63014138	+
GWHAAZE00000003	CDS	63014855	63014919	+
GWHAAZE00000003	CDS	63015013	63015107	+
GWHAAZE00000003	CDS	63016293	63016383	+

Transcript Sequence
>GWHTAAZE011491 ATGGTTGCTTGTTTGATTCTGACAGATTCAAGTTCGAACTCAAATTCATTAAAATTGAGAGATGACTGGAGGAAGAGATCCAGACCTATTCCCCCTGGTGGCACCTACCCTGCCAAAGACCAGTGCAGTCAGTGTGGGTTGTGTGATACTTACTACATTGCGCATGTGAAGAATGCGTGTGCTTTCTTGGGAGATGGCATGTCTAGAATTGAACACCTAGAGCCTGTGGTACATGGGCGAGGGAGGAAAGAAGATTCACTAGATGAGACTTACTTAGGGGTCCATGAGGAGCTATTATATGCTCGTAAAACTAAGCCCGTAGAAGGAGCTCAATGGACAGGGGTAGTAACGACAATCGCAATAGAAATGCTGAAATCAGGCATGGTGGAGGCTGTCATTTGTGTGCAGAGTGATCCAGAGGATAGACTTGCACCAAAACCTGTTTTGGCAAGGACACCAGAGGAAGTGCTAGCAGCTAAAGGTGTTAAGCCGACATTGTCTCCTAATCTTAATACCCTTGCTTTGGTTGAGGCAGCAGGTGTAAAGCGTCTTCTTTTCTGTGGTGTTGGGTGCCAAGTGCAAGCATTAAGATCAGTGGAGCGCCATTTGAATTTGGAGAAGCTTTATGTACTTGGCACTAATTGTGTGGACAATGGAAAGAGAGAAGGGCTAGATAAGTTTTTAAAGGCTGCTAGCACAGAACCTGAAACAGTTCTTCATTATGAGTTTATGCAAGATTATAAGGTCCATCTGAAGCATTTGGATGGCCATATAGAAGAGGTTCCATATTTCTGTCTACCAGCAAATGACTTGGTTGATGTAATCGCACCCTCTTGCTATAGCTGTTTTGACTACACAAATGGATTAGCGGACTTGGTGGTGGGTTACATGGGTGTCCCAAAATATGCTGGAATCAGCATGACTCAGCATCCCCAGTATGTTACTGTTAGAAATGAACGTGGAAGAGAAATGCTAGACCTGGTTAAAAACCTTCTGGAGATTACTCCTACGACCAGAAATGGTCCTGCTCAGCCTGCCCCAAAGTTCATTGGCAACTTAATAGCCTTTCTTCTAAACCTAGTTGGTCCGAAAGGCCTAGAATTTGCCCGTTATTCACTGGATTACCATACCATTAGGAATTATCTGTATGTGAATCGCACATGGGGAAAAGAAAGAGCGGATAGACACATGCCATCGTACGCGAAGAAACTTGTTGCAGAGTACAACAAGAATGGTGAAATTGATCAAATGCTCTCCCCTAAGTGA

Network for GWHGAAZE011479

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04422.14	FrhB_FdhB_N	99	173	1.60E-25
PF04432.14	FrhB_FdhB_C	182	334	2.00E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18010	HCAR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.582
	SRR3591706	second leaf	47.316
	SRR3591707	mature leaf	49.926
	SRR3591708	Shoot apex	30.862
	SRR3591709	Stem	14.419
	SRR3591710	White floral bud	7.954
	SRR3591711	White flower	6.962
	SRR3591712	Green floral bud	11.580
	SRR3591713	Yellow flower	4.434
SRP173429	SRR8316895	Juvenile bud stage	25.389
	SRR8316896	Juvenile bud stage	24.139
	SRR8316897	Juvenile bud stage	11.178
	SRR8316894	Third green stage	13.627
	SRR8316900	Third green stage	28.663
	SRR8316901	Third green stage	26.239
	SRR8316898	Complete white stage	6.877
	SRR8316899	Complete white stage	34.798
	SRR8316903	Complete white stage	10.300
	SRR8316902	Silver flowering stage	3.557
	SRR8316904	Silver flowering stage	3.998
	SRR8316905	Silver flowering stage	1.830
	SRR8316906	Gold flowering stage	5.873
	SRR8316907	Gold flowering stage	6.869
	SRR8316908	Gold flowering stage	3.666
SRP132670	SRR6706286	Control	22.691
	SRR6706287	Light intensity 50%	26.432
	SRR6706288	Light intensity 20%	28.935
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.637
	CNS0095593	Slightly white alabastrum(diploid) 2	14.515
	CNS0095594	Slightly white alabastrum(diploid) 3	8.945
	CNS0095595	Whole white alabastrum(diploid) 2	10.645
	CNS0095596	Whole white alabastrum(diploid) 3	9.618
	CNS0095597	Whole white alabastrum(diploid) 4	9.685
	CNS0095598	Silvery flower (diploied) 1	25.182
	CNS0095599	Silvery flower (diploied) 2	24.114
	CNS0095600	Silvery flower (diploied) 3	6.953
	CNS0095601	Golden flower (diploid) 1	16.646
	CNS0095602	Golden flower (diploid) 2	9.630
	CNS0095603	Golden flower (diploid) 3	9.417
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.908
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.303
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.371
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.992
	CNS0095610	Silvery flower (tetraploid) 1	5.115
	CNS0095611	Silvery flower (tetraploid) 2	5.962
	CNS0095612	Silvery flower (tetraploid) 3	3.937
	CNS0095613	Golden flower (tetraploid) 1	1.780
	CNS0095614	Golden flower (tetraploid) 2	5.221
	CNS0095615	Golden flower (tetraploid) 3	0.966
CRA001975	CRR073297	Stem 1	30.716
	CRR073298	Stem 2	24.083
	CRR073299	Stem 3	16.330
	CRR073300	Leaf 1	20.333
	CRR073301	Leaf 2	22.068
	CRR073302	Leaf 3	13.788
	CRR073303	Juvenile bud 1	14.074
	CRR073304	Juvenile bud 2	5.972
	CRR073305	Juvenile bud 3	10.347
	CRR073306	Third green 1	3.892
	CRR073307	Third green 2	1.601
	CRR073308	Third green 3	1.560
	CRR073309	Second white 1	1.927
	CRR073310	Second white 2	0.995
	CRR073311	Second white 3	1.315
	CRR073312	Silver flowering 1	1.478
	CRR073313	Silver flowering 2	0.481
	CRR073314	Silver flowering 3	1.160
	CRR073315	Gold flowering 1	28.736
	CRR073316	Gold flowering 2	44.141
	CRR073317	Gold flowering 3	20.013
	CRR073318	Tawny withering 1	12.038
	CRR073319	Tawny withering 2	14.286
	CRR073320	Tawny withering 3	13.062