Detail information of GWHGAAZE011492


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011091372.10PREDICTED: beta-amylase 1, chloroplastic [Sesamum indicum]
Swissprottr|Q9LIR6|BAM1_ARATH0Beta-amylase 1, chloroplastic (Precursor)
trEMBLtr|B9HSW9|B9HSW9_POPTR0Beta-amylase {ECO:0000256|RuleBase:RU000509}
TAIR10AT3G23920.10beta-amylase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene6366177763667245-
GWHAAZE00000003mRNA6366177763667245-
GWHAAZE00000003exon6366177763661932-
GWHAAZE00000003exon6366200663662584-
GWHAAZE00000003exon6366267963662789-
GWHAAZE00000003exon6366331963663529-
GWHAAZE00000003exon6366607363666180-
GWHAAZE00000003exon6366663563667245-
GWHAAZE00000003CDS6366663563667245-
GWHAAZE00000003CDS6366607363666180-
GWHAAZE00000003CDS6366331963663529-
GWHAAZE00000003CDS6366267963662789-
GWHAAZE00000003CDS6366200663662584-
GWHAAZE00000003CDS6366177763661932-
Transcript Sequence

Network for GWHGAAZE011492

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01373.18Glyco_hydro_141152092.00E-34
PF01373.18Glyco_hydro_142405561.10E-93
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01177E3.2.1.2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0000272biological_processpolysaccharide catabolic process
GO:0016161molecular_functionbeta-amylase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf238.418
SRR3591706second leaf143.112
SRR3591707mature leaf199.149
SRR3591708Shoot apex193.167
SRR3591709Stem173.106
SRR3591710White floral bud84.631
SRR3591711White flower173.642
SRR3591712Green floral bud22.840
SRR3591713Yellow flower232.384
SRP173429 SRR8316895Juvenile bud stage 76.403
SRR8316896Juvenile bud stage 93.573
SRR8316897Juvenile bud stage 94.881
SRR8316894Third green stage 22.973
SRR8316900Third green stage 50.600
SRR8316901Third green stage 47.991
SRR8316898Complete white stage 60.532
SRR8316899Complete white stage 49.622
SRR8316903Complete white stage 92.138
SRR8316902Silver flowering stage112.241
SRR8316904Silver flowering stage97.449
SRR8316905Silver flowering stage60.150
SRR8316906Gold flowering stage 241.444
SRR8316907Gold flowering stage 226.969
SRR8316908Gold flowering stage 145.849
SRP132670SRR6706286Control168.269
SRR6706287Light intensity 50%120.884
SRR6706288Light intensity 20%99.092
CNP0000432CNS0095592Slightly white alabastrum(diploid) 151.889
CNS0095593Slightly white alabastrum(diploid) 233.326
CNS0095594Slightly white alabastrum(diploid) 344.162
CNS0095595Whole white alabastrum(diploid) 226.489
CNS0095596Whole white alabastrum(diploid) 316.419
CNS0095597Whole white alabastrum(diploid) 418.521
CNS0095598Silvery flower (diploied) 1200.640
CNS0095599Silvery flower (diploied) 2270.444
CNS0095600Silvery flower (diploied) 3226.286
CNS0095601Golden flower (diploid) 1415.669
CNS0095602Golden flower (diploid) 2349.273
CNS0095603Golden flower (diploid) 3348.646
CNS0095604Slightly white alabastrum(tetraploid) 120.918
CNS0095605Slightly white alabastrum(tetraploid) 224.431
CNS0095606Slightly white alabastrum(tetraploid) 344.399
CNS0095607Whole white alabastrum(tetraploid) 112.140
CNS0095608Whole white alabastrum(tetraploid) 27.245
CNS0095609Whole white alabastrum(tetraploid) 338.714
CNS0095610Silvery flower (tetraploid) 1107.596
CNS0095611Silvery flower (tetraploid) 2111.256
CNS0095612Silvery flower (tetraploid) 38.582
CNS0095613Golden flower (tetraploid) 161.949
CNS0095614Golden flower (tetraploid) 298.282
CNS0095615Golden flower (tetraploid) 3185.222
CRA001975CRR073297Stem 170.113
CRR073298Stem 256.649
CRR073299Stem 383.779
CRR073300Leaf 138.416
CRR073301Leaf 257.296
CRR073302Leaf 333.737
CRR073303Juvenile bud 144.604
CRR073304Juvenile bud 255.523
CRR073305Juvenile bud 336.048
CRR073306Third green 1300.958
CRR073307Third green 2194.528
CRR073308Third green 3192.998
CRR073309Second white 170.175
CRR073310Second white 263.245
CRR073311Second white 362.063
CRR073312Silver flowering 1101.353
CRR073313Silver flowering 2131.750
CRR073314Silver flowering 3126.782
CRR073315Gold flowering 145.565
CRR073316Gold flowering 243.462
CRR073317Gold flowering 343.698
CRR073318Tawny withering 137.336
CRR073319Tawny withering 231.151
CRR073320Tawny withering 319.157