Gene detail

Detail information of GWHGAAZE011505

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007227725.1	hypothetical protein PRUPE_ppa004448mg [Prunus persica]
Swissprot	tr\|Q94AR8\|LEUC_ARATH	3-isopropylmalate dehydratase large subunit (Precursor)
trEMBL	tr\|M5XSL7\|M5XSL7_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ28924.1}
TAIR10	AT4G13430.1	isopropyl malate isomerase large subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	63966773	63974989	+
GWHAAZE00000003	mRNA	63966773	63974989	+
GWHAAZE00000003	exon	63966773	63966931	+
GWHAAZE00000003	exon	63968931	63969083	+
GWHAAZE00000003	exon	63969194	63969262	+
GWHAAZE00000003	exon	63969504	63969620	+
GWHAAZE00000003	exon	63969912	63969986	+
GWHAAZE00000003	exon	63970192	63970269	+
GWHAAZE00000003	exon	63970898	63970993	+
GWHAAZE00000003	exon	63971191	63971240	+
GWHAAZE00000003	exon	63971644	63971698	+
GWHAAZE00000003	exon	63971891	63972022	+
GWHAAZE00000003	exon	63973333	63973380	+
GWHAAZE00000003	exon	63973503	63973644	+
GWHAAZE00000003	exon	63973946	63974082	+
GWHAAZE00000003	exon	63974849	63974989	+
GWHAAZE00000003	CDS	63966773	63966931	+
GWHAAZE00000003	CDS	63968931	63969083	+
GWHAAZE00000003	CDS	63969194	63969262	+
GWHAAZE00000003	CDS	63969504	63969620	+
GWHAAZE00000003	CDS	63969912	63969986	+
GWHAAZE00000003	CDS	63970192	63970269	+
GWHAAZE00000003	CDS	63970898	63970993	+
GWHAAZE00000003	CDS	63971191	63971240	+
GWHAAZE00000003	CDS	63971644	63971698	+
GWHAAZE00000003	CDS	63971891	63972022	+
GWHAAZE00000003	CDS	63973333	63973380	+
GWHAAZE00000003	CDS	63973503	63973644	+
GWHAAZE00000003	CDS	63973946	63974082	+
GWHAAZE00000003	CDS	63974849	63974989	+

Transcript Sequence
>GWHTAAZE011517 ATGACTATGACTGAGAAAATATTTTCTAGGGCTTCTGAGAAAACCCAGTTGAGCCCGGGTGATAATGTTTGGGTTAATGTTGATATCTTGATGACCCATGATGTTGGTGGCCCTGGTGTCATGGGAATTTTCAAGAGAGAATTTGGGGAGAATGCCAAGGTTTGGGACCGTGAGAAGATTGTTGTTATACCTGACCACTACATATTCACGACCGATGAACGAGCAAATCGAAATGTGGATTTCGTGAGGGATTTCTGCACTGAACAAAATATTAAGTACTTTTATGATATTAAAGATCTCGGAAATTTCAAGGCTAATCCAGATTATAAAGGTGTATGCCATGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAGGTCCTGTTAGGTACAGACTCCCACACATGTACTGCCGGAGCATTTGGCCAATTTGCTACTGGAATTGGCATTACTGATGCAGGTTTTGTATTGGGCACTGGAAAGCTTTTGCTTAAGGTGCCTCCAACTTTGAGGTTTGTATTGGATGGTGAAATGCCCGATTATTTGCTTGCAAAGGATTTGATTTTACAAATTATTGGTGAAATCTCCGTCTCTGGTGCCACATATAAAGCAATGGAGTTTGCTGGCTCTACCATCGAAAGCTTAACTATGGAAGAAAGGATGACATTATGCAACATGGCTGTTGAAGCTGGAGGAAAGAATGGGATTGTTCCGGCTGATGCTACTACCTATAAGTACCTTGAGGACAAAACATCCCTGCCCTTTGAGCCAGTTTATAGTGATGATCAAGCCAGATTTGTTCAGGAGTACAGATTTGATGTCTCAAAGCTGGAGCCGTTGGTGGCAAAGCCTCATTCTCCTGATAATCGCGCTTTAGCAAGAGAATGCAAAGATATGAAAATTGATAGAGTGTATATTGGATCTTGTACCGGTGGAAAAACTGAGGATTTCATGGCTGCAGCCAAAGTTTTCTTAGTTTCTGGCAAAAAGGTCAAAGTACCCACATTCCTTGTCCCAGCTACTCAAAAGGTGTGGATGGACGTATATAGCCTCCCAGTGCCAGGATCTGGTGGAAAGACTTGCTCCCAGATTTTCGAAGAAGCTGGTTGTGATACACCTGCTAGTCCTAGTTGCGGTGCTTGTTTGGGCGGCCCTAAAGACACTTACGCACGGCAGCACAAATTGATTATCTTTAGTTTACTAGATATTTTGTTTATGGCCACCTCCTATATGGAGATGGCAATTCGTAACACAAGACGAAATCAACTCAAATTTTCCAGGTATTGGTGGTGTCTTGCCTTGTCAGGGGTATGCGTCTCAACCACCAATAGGAACTTCCCTGGACGCATGGGCCACAAAGAAGGTAGAATTTATCTAGTGTCTCCATACACGGCCGCAGCATCGGCTTTGACTGGCTTTGTCACCGATCCAAGAGACTTTCTGCAGTAA

Network for GWHGAAZE011505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00330.21	Aconitase	6	473	1.90E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01703	leuC, IPMI-L	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		C5-Branched dibasic acid metabolism	map00660
		Valine, leucine and isoleucine biosynthesis	map00290
		Glucosinolate biosynthesis	map00966

Gene Ontology

GO term	Ontology	Name
GO:0003861	molecular_function	3-isopropylmalate dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.107
	SRR3591706	second leaf	20.262
	SRR3591707	mature leaf	19.255
	SRR3591708	Shoot apex	13.411
	SRR3591709	Stem	27.365
	SRR3591710	White floral bud	13.447
	SRR3591711	White flower	9.599
	SRR3591712	Green floral bud	19.777
	SRR3591713	Yellow flower	11.009
SRP173429	SRR8316895	Juvenile bud stage	5.526
	SRR8316896	Juvenile bud stage	11.146
	SRR8316897	Juvenile bud stage	6.634
	SRR8316894	Third green stage	3.591
	SRR8316900	Third green stage	9.698
	SRR8316901	Third green stage	9.108
	SRR8316898	Complete white stage	0.808
	SRR8316899	Complete white stage	1.950
	SRR8316903	Complete white stage	0.630
	SRR8316902	Silver flowering stage	0.760
	SRR8316904	Silver flowering stage	1.003
	SRR8316905	Silver flowering stage	0.536
	SRR8316906	Gold flowering stage	1.761
	SRR8316907	Gold flowering stage	1.153
	SRR8316908	Gold flowering stage	0.743
SRP132670	SRR6706286	Control	4.229
	SRR6706287	Light intensity 50%	4.313
	SRR6706288	Light intensity 20%	4.978
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.799
	CNS0095593	Slightly white alabastrum(diploid) 2	7.272
	CNS0095594	Slightly white alabastrum(diploid) 3	13.075
	CNS0095595	Whole white alabastrum(diploid) 2	11.646
	CNS0095596	Whole white alabastrum(diploid) 3	12.873
	CNS0095597	Whole white alabastrum(diploid) 4	11.862
	CNS0095598	Silvery flower (diploied) 1	0.698
	CNS0095599	Silvery flower (diploied) 2	2.093
	CNS0095600	Silvery flower (diploied) 3	2.760
	CNS0095601	Golden flower (diploid) 1	1.819
	CNS0095602	Golden flower (diploid) 2	1.709
	CNS0095603	Golden flower (diploid) 3	2.489
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.183
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.368
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.807
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.328
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.668
	CNS0095610	Silvery flower (tetraploid) 1	2.979
	CNS0095611	Silvery flower (tetraploid) 2	3.041
	CNS0095612	Silvery flower (tetraploid) 3	3.955
	CNS0095613	Golden flower (tetraploid) 1	2.307
	CNS0095614	Golden flower (tetraploid) 2	3.747
	CNS0095615	Golden flower (tetraploid) 3	1.848
CRA001975	CRR073297	Stem 1	6.333
	CRR073298	Stem 2	4.613
	CRR073299	Stem 3	4.683
	CRR073300	Leaf 1	8.492
	CRR073301	Leaf 2	5.689
	CRR073302	Leaf 3	5.371
	CRR073303	Juvenile bud 1	6.120
	CRR073304	Juvenile bud 2	6.786
	CRR073305	Juvenile bud 3	2.850
	CRR073306	Third green 1	1.872
	CRR073307	Third green 2	2.417
	CRR073308	Third green 3	1.652
	CRR073309	Second white 1	1.233
	CRR073310	Second white 2	1.698
	CRR073311	Second white 3	1.391
	CRR073312	Silver flowering 1	2.943
	CRR073313	Silver flowering 2	3.522
	CRR073314	Silver flowering 3	1.624
	CRR073315	Gold flowering 1	3.078
	CRR073316	Gold flowering 2	3.392
	CRR073317	Gold flowering 3	2.768
	CRR073318	Tawny withering 1	3.651
	CRR073319	Tawny withering 2	3.808
	CRR073320	Tawny withering 3	4.191