Gene detail

Detail information of GWHGAAZE011506

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI31237.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q94AR8\|LEUC_ARATH	3-isopropylmalate dehydratase large subunit (Precursor)
trEMBL	tr\|W9RYX0\|W9RYX0_9ROSA	3-isopropylmalate dehydratase {ECO:0000313\|EMBL:EXC04076.1}
TAIR10	AT4G13430.1	isopropyl malate isomerase large subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	63996269	64005145	+
GWHAAZE00000003	mRNA	63996269	64005145	+
GWHAAZE00000003	exon	63996269	63996439	+
GWHAAZE00000003	exon	63996551	63996721	+
GWHAAZE00000003	exon	63998486	63998638	+
GWHAAZE00000003	exon	63998749	63998838	+
GWHAAZE00000003	exon	63999071	63999217	+
GWHAAZE00000003	exon	63999494	63999568	+
GWHAAZE00000003	exon	63999774	63999851	+
GWHAAZE00000003	exon	64000506	64000601	+
GWHAAZE00000003	exon	64000793	64000842	+
GWHAAZE00000003	exon	64001243	64001297	+
GWHAAZE00000003	exon	64001491	64001622	+
GWHAAZE00000003	exon	64003091	64003138	+
GWHAAZE00000003	exon	64003261	64003423	+
GWHAAZE00000003	exon	64003698	64003867	+
GWHAAZE00000003	exon	64004981	64005145	+
GWHAAZE00000003	CDS	63996269	63996439	+
GWHAAZE00000003	CDS	63996551	63996721	+
GWHAAZE00000003	CDS	63998486	63998638	+
GWHAAZE00000003	CDS	63998749	63998838	+
GWHAAZE00000003	CDS	63999071	63999217	+
GWHAAZE00000003	CDS	63999494	63999568	+
GWHAAZE00000003	CDS	63999774	63999851	+
GWHAAZE00000003	CDS	64000506	64000601	+
GWHAAZE00000003	CDS	64000793	64000842	+
GWHAAZE00000003	CDS	64001243	64001297	+
GWHAAZE00000003	CDS	64001491	64001622	+
GWHAAZE00000003	CDS	64003091	64003138	+
GWHAAZE00000003	CDS	64003261	64003423	+
GWHAAZE00000003	CDS	64003698	64003867	+
GWHAAZE00000003	CDS	64004981	64005145	+

Transcript Sequence
>GWHTAAZE011518 AATCTCTCTAACCCATCTCTGCTATTTCCCCAGGATTTGGGTCTCTCTGCTTTCTCTGGACAATCCTCACTTTTCTCCATTCAGAAAAATCCCAAGAAAAATGTTTCCAAGAAAATTGTTTCGGTCATGGCCCCACAACAGTCTGAACGCAAGCCATCCACCACTGGATCAGTCAAGAAAGCAATGACTATGACTGAGAAAATATTTTCTAGGGCTTCTGAGAAAACCCAGTTGAGCCCGGGTGATAATGTTTGGGTTAATGTTGATATCTTGATGACCCATGATGTTTGTGGCCCTGGTGCCATGGGAATTTTCAAGAGAGAATTTGGGGAGAATGCTAAGGTTTGGGACCGCGAGAAAATTGTTGTTATACCTGACCACTACATATTCACGACCGATGAACGAGCAAATCGAAATGTGGATATCTTGAGGGATTTCTGCACTGAACAAAATATTAAGTACTTTTATGATATTAAAGATCTTGGAAATTTCAAGGCTAATCCAGATTATAAAGGTGTATGCCATGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAGGTGTTTATTTCCTATATATCAATAAACGCTCACCGTCACCTGGGCCTCCAGGTTCTGTTAGGTACAGACTCCCACACATGTACTGCCGGAGCATTTGGCCAATTTGCTTCTGGAATCGGCAACACTGATGCAGGTTTTGTATTGGGCGCTGGAAAGCTTTTGCTTAAGGTGCCTCCAACTTTGAGGTTTGTATTGGATGGTGAAATGCCCAACTATTTGCTTGCAAAGGATTTGATTTTACAAATTATTGGTGAAATCTCCGTCTCTGGTGCCACATATAAAGCAATGGAGTTTGTTGGCTCTACCGTTGAAAGCTTAACTATGGAAGAAAGGATGACATTATGCAACATGGTTGTTGAAGCTGGAGGAAAGAATGGGATTGTTCCGGCTGATGCTACTACCTATAAGTACCTTGAGGGCAAAACATCCCTGCCCTTTGAGCCAGTTTATAGTGATGATCAAGCCAGATTTGTTCAGGAGTACAGATTTGATGTCTCAAAGCTGGAGCCATTGGTGGCAAAGCCTCATTCTCCCGATAATCGCGCCTTAGCTAGAGAATGCAAAGATGTGAAAATTGACAGAGTATATATTGGATCTTGTACCGGTGGAAAAACTGAGGATTTCATGGCGGCAGCCAAAGTTTTCTTAGCTTCTGGCACAAAGGTCAAAGTACCCACATTCCTTGTCCCGGCTACTCAAAAGGTGTGGATGGACGTATATAGCCTCCCTGTTCCAGGATCTGGTGGAAAGACTTGCTCCCAGATTTTCGAAGAAGCTGGATGTGATACCCCTGCTAGTCCTAGTTGCGGTGCTTGTTTGGGCGGCCCTAAAGACACTTATGCACGCTTGAATGAACCTCAGGCAAGGGAGCACACATTGATTATCATTAGTTTACTAGATATTTTGTTAATGGCCACTTCCTATATGGAGATGGCAATTCGTGACATGGGACGAAATCAACTCAAATTTATTAGGTATTGGTGGTGTCCTACCTTGGTGGTGTCTTACCTTGTCCAGGATGAACTTGCCAGACCCTTATTGATTTTGTGTCAATTGCAGGTATGCGTCTCAACCACTAATAGGAACTTCCCGGGACGCATGGGCCACAAAGAAGGTGAAATTTATCTAGCGTCTCCATACACGGCCGCAGCGTCGGCTTTGACTGGCTTTGTCACCGATCCCAGAGACTTTTTGCAGTAA

Network for GWHGAAZE011506

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00330.21	Aconitase	67	577	7.50E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01703	leuC, IPMI-L	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		C5-Branched dibasic acid metabolism	map00660
		Valine, leucine and isoleucine biosynthesis	map00290
		Glucosinolate biosynthesis	map00966

Gene Ontology

GO term	Ontology	Name
GO:0003861	molecular_function	3-isopropylmalate dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.249
	SRR3591706	second leaf	92.626
	SRR3591707	mature leaf	87.196
	SRR3591708	Shoot apex	57.386
	SRR3591709	Stem	62.117
	SRR3591710	White floral bud	38.173
	SRR3591711	White flower	56.133
	SRR3591712	Green floral bud	54.105
	SRR3591713	Yellow flower	51.819
SRP173429	SRR8316895	Juvenile bud stage	40.798
	SRR8316896	Juvenile bud stage	56.304
	SRR8316897	Juvenile bud stage	27.204
	SRR8316894	Third green stage	22.214
	SRR8316900	Third green stage	82.240
	SRR8316901	Third green stage	72.711
	SRR8316898	Complete white stage	18.730
	SRR8316899	Complete white stage	70.699
	SRR8316903	Complete white stage	32.536
	SRR8316902	Silver flowering stage	23.407
	SRR8316904	Silver flowering stage	31.061
	SRR8316905	Silver flowering stage	14.417
	SRR8316906	Gold flowering stage	52.128
	SRR8316907	Gold flowering stage	50.041
	SRR8316908	Gold flowering stage	62.285
SRP132670	SRR6706286	Control	85.531
	SRR6706287	Light intensity 50%	85.808
	SRR6706288	Light intensity 20%	94.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.754
	CNS0095593	Slightly white alabastrum(diploid) 2	52.083
	CNS0095594	Slightly white alabastrum(diploid) 3	39.950
	CNS0095595	Whole white alabastrum(diploid) 2	46.120
	CNS0095596	Whole white alabastrum(diploid) 3	43.456
	CNS0095597	Whole white alabastrum(diploid) 4	37.147
	CNS0095598	Silvery flower (diploied) 1	58.494
	CNS0095599	Silvery flower (diploied) 2	53.523
	CNS0095600	Silvery flower (diploied) 3	72.218
	CNS0095601	Golden flower (diploid) 1	52.059
	CNS0095602	Golden flower (diploid) 2	82.072
	CNS0095603	Golden flower (diploid) 3	80.763
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.403
	CNS0095606	Slightly white alabastrum(tetraploid) 3	105.902
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.586
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.322
	CNS0095609	Whole white alabastrum(tetraploid) 3	81.607
	CNS0095610	Silvery flower (tetraploid) 1	77.088
	CNS0095611	Silvery flower (tetraploid) 2	90.513
	CNS0095612	Silvery flower (tetraploid) 3	67.375
	CNS0095613	Golden flower (tetraploid) 1	52.400
	CNS0095614	Golden flower (tetraploid) 2	94.046
	CNS0095615	Golden flower (tetraploid) 3	32.794
CRA001975	CRR073297	Stem 1	72.125
	CRR073298	Stem 2	67.787
	CRR073299	Stem 3	78.612
	CRR073300	Leaf 1	91.951
	CRR073301	Leaf 2	86.672
	CRR073302	Leaf 3	95.384
	CRR073303	Juvenile bud 1	100.554
	CRR073304	Juvenile bud 2	73.341
	CRR073305	Juvenile bud 3	108.964
	CRR073306	Third green 1	18.242
	CRR073307	Third green 2	12.672
	CRR073308	Third green 3	19.452
	CRR073309	Second white 1	52.679
	CRR073310	Second white 2	37.315
	CRR073311	Second white 3	31.087
	CRR073312	Silver flowering 1	37.021
	CRR073313	Silver flowering 2	52.370
	CRR073314	Silver flowering 3	45.673
	CRR073315	Gold flowering 1	94.018
	CRR073316	Gold flowering 2	125.869
	CRR073317	Gold flowering 3	95.660
	CRR073318	Tawny withering 1	74.209
	CRR073319	Tawny withering 2	70.093
	CRR073320	Tawny withering 3	72.092