Detail information of GWHGAAZE011507


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006340886.17.47954E-79PREDICTED: auxin-responsive protein IAA13-like [Solanum tuberosum]
Swissprottr|Q38829|IAA11_ARATH3E-48Auxin-responsive protein IAA11
trEMBLtr|G9HPW1|G9HPW1_SOLLC1E-77Auxin-responsive protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT4G28640.21E-36indole-3-acetic acid inducible 11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene6401713364020257-
GWHAAZE00000003mRNA6401713364020257-
GWHAAZE00000003exon6401713364017162-
GWHAAZE00000003exon6401794164018119-
GWHAAZE00000003exon6401847164018793-
GWHAAZE00000003exon6402011564020257-
GWHAAZE00000003CDS6402011564020257-
GWHAAZE00000003CDS6401847164018793-
GWHAAZE00000003CDS6401794164018119-
GWHAAZE00000003CDS6401713364017162-
Transcript Sequence

Network for GWHGAAZE011507

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02309.17AUX_IAA141975.00E-48
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA

KEGG pathway

KO Enzyme pathway mapID
K14484IAA Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.157
SRR3591706second leaf20.591
SRR3591707mature leaf13.301
SRR3591708Shoot apex29.869
SRR3591709Stem68.120
SRR3591710White floral bud9.839
SRR3591711White flower16.054
SRR3591712Green floral bud15.358
SRR3591713Yellow flower4.533
SRP173429 SRR8316895Juvenile bud stage 12.812
SRR8316896Juvenile bud stage 15.608
SRR8316897Juvenile bud stage 4.344
SRR8316894Third green stage 4.459
SRR8316900Third green stage 8.023
SRR8316901Third green stage 9.137
SRR8316898Complete white stage 0.910
SRR8316899Complete white stage 8.914
SRR8316903Complete white stage 1.633
SRR8316902Silver flowering stage1.883
SRR8316904Silver flowering stage0.631
SRR8316905Silver flowering stage0.502
SRR8316906Gold flowering stage 2.197
SRR8316907Gold flowering stage 0.932
SRR8316908Gold flowering stage 5.657
SRP132670SRR6706286Control3.997
SRR6706287Light intensity 50%3.976
SRR6706288Light intensity 20%3.427
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.865
CNS0095593Slightly white alabastrum(diploid) 26.739
CNS0095594Slightly white alabastrum(diploid) 36.883
CNS0095595Whole white alabastrum(diploid) 25.087
CNS0095596Whole white alabastrum(diploid) 34.248
CNS0095597Whole white alabastrum(diploid) 46.819
CNS0095598Silvery flower (diploied) 14.775
CNS0095599Silvery flower (diploied) 22.943
CNS0095600Silvery flower (diploied) 32.278
CNS0095601Golden flower (diploid) 10.734
CNS0095602Golden flower (diploid) 23.068
CNS0095603Golden flower (diploid) 34.181
CNS0095604Slightly white alabastrum(tetraploid) 19.811
CNS0095605Slightly white alabastrum(tetraploid) 26.315
CNS0095606Slightly white alabastrum(tetraploid) 325.309
CNS0095607Whole white alabastrum(tetraploid) 14.868
CNS0095608Whole white alabastrum(tetraploid) 22.603
CNS0095609Whole white alabastrum(tetraploid) 36.348
CNS0095610Silvery flower (tetraploid) 14.469
CNS0095611Silvery flower (tetraploid) 22.576
CNS0095612Silvery flower (tetraploid) 34.365
CNS0095613Golden flower (tetraploid) 11.795
CNS0095614Golden flower (tetraploid) 25.646
CNS0095615Golden flower (tetraploid) 31.206
CRA001975CRR073297Stem 124.698
CRR073298Stem 225.690
CRR073299Stem 341.961
CRR073300Leaf 113.221
CRR073301Leaf 212.043
CRR073302Leaf 311.005
CRR073303Juvenile bud 113.739
CRR073304Juvenile bud 26.049
CRR073305Juvenile bud 312.627
CRR073306Third green 12.202
CRR073307Third green 23.257
CRR073308Third green 34.047
CRR073309Second white 17.008
CRR073310Second white 29.607
CRR073311Second white 35.697
CRR073312Silver flowering 12.559
CRR073313Silver flowering 23.307
CRR073314Silver flowering 34.356
CRR073315Gold flowering 130.478
CRR073316Gold flowering 234.509
CRR073317Gold flowering 334.131
CRR073318Tawny withering 162.869
CRR073319Tawny withering 257.430
CRR073320Tawny withering 369.133