Gene detail

Detail information of GWHGAAZE011512

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010050618.1	1.64564E-30	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104439218 [Eucalyptus grandis]
Swissprot	tr\|Q9SZ67\|WRK19_ARATH	0.000000006	Probable WRKY transcription factor 19
trEMBL	tr\|A0A059B5R9\|A0A059B5R9_EUCGR	1E-21	Uncharacterized protein {ECO:0000313\|EMBL:KCW60990.1}
TAIR10	AT5G17680.1	8E-19	disease resistance protein (TIR-NBS-LRR class), putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	64153888	64160618	+
GWHAAZE00000003	mRNA	64153888	64160618	+
GWHAAZE00000003	exon	64153888	64153998	+
GWHAAZE00000003	exon	64154242	64154462	+
GWHAAZE00000003	exon	64156291	64156497	+
GWHAAZE00000003	exon	64156626	64156782	+
GWHAAZE00000003	exon	64159076	64159150	+
GWHAAZE00000003	exon	64159233	64159348	+
GWHAAZE00000003	exon	64159534	64159712	+
GWHAAZE00000003	exon	64159876	64160150	+
GWHAAZE00000003	exon	64160250	64160391	+
GWHAAZE00000003	exon	64160485	64160618	+
GWHAAZE00000003	CDS	64153888	64153998	+
GWHAAZE00000003	CDS	64154242	64154462	+
GWHAAZE00000003	CDS	64156291	64156497	+
GWHAAZE00000003	CDS	64156626	64156782	+
GWHAAZE00000003	CDS	64159076	64159150	+
GWHAAZE00000003	CDS	64159233	64159348	+
GWHAAZE00000003	CDS	64159534	64159712	+
GWHAAZE00000003	CDS	64159876	64160150	+
GWHAAZE00000003	CDS	64160250	64160391	+
GWHAAZE00000003	CDS	64160485	64160618	+

Transcript Sequence
>GWHTAAZE011524 ATGTATGGGGAGGAACATGTTAAGAAGAAGAGGAGGGGAGCCCCATCAAGCCCAACTCCGATGGTTAACAATACTACTGCATCATCAACACCAGCCTCTGCTTCAGATTTCATGGTAGATTGCAGGGCAAATGGAGAGCAAATGATTTATCCCATCTTTTATGACGTTGAGCCCAACGAAGTTCAACATTGTGAAAGGGGGAGCTACAAGGATGCCTTTCTTGAACACAAGAAGGATGAAAAATTGAATGAAGAGATTGTCCAGCAATGGATAAAAGCATTGGAAACAATTGGAGACTTGAAGGGGTGGGAATTGAAGAAAGTAACGAACAGGAGGGATTCTCCCCCAAAAGATTATGAGATCCTTGTTGGGAAATTTGTATCCATTGCTGCAAATCTTCCTTTGGTTCTCGTGACTCTAGGCTCATCATTATTTATAGAGGAGGATATAGATGTTTGGGACGAGATATTGAGAAATCTAGAAAAAGTACCTCATGGCGAAGTCGTACAAAAGTTGAGATTCAGTTATGAAGCATTAAAGTCTCTACTAACAATTAGTGACAATGGTACCCTAATAATGCATGACTCACTAAGAGACCTTGGTAAGCAAATCATCCGTGAAGAAGGTTTGAGTGTGCTTGGCAATCGGAGCAGGTTGCGGGACGAAGAAGCTTTGCAAGTACTAGAAGCACGCCAGGGAGCGAACATGTTCAAGTTCTCTGCCTTGATTGTTCTACTGAAACTTGGTCGATGCCTTGTATGCGGGACTTTCATGGCTCCGATGGCACTTCTGGGAAACTTTAAGCCCATTAATTTTAATATGAAGAATCTTGTTGCTCTCGATCTTTCACATAGTTTGGATCGAAATAATTGGGGAGTCAAATCAAGAGTTCCTCATTTATATGCGTTTTCATCTTTAGAGGTGTTGGAACTAGTCGGTTGTGGGATGCTTTGTAGTGTTGATGGGCTCGAACAATTGAAATTGTTAAAATACACGGATGCATCTTGTGTCCATCCACGAAAAGCTGCCGGATCTGTCAAAACTAACAAAGTTACATACATTAAATGTCTAGACAGATTAGAATCCTTAGAATATTTGGATATGGGTTATTCCATGTCATTAGAGATATTACCAAACCTACCAAACTTTGGAATGTTAAAAGACATAAGTTTGCGTAATTGCGTAAAGTTGCAAGATGTTGAAACCCTTACAGTTGTTGAATCCTTGGAGAGTCTGGACGTGTCATTTTGCACAGCACTAAAGAACATGCCAGATCTGACAATGTTTAAAAAATTGAAGAAATTATATATTAGGTCTCTAAAGGAGCTTACCGAACTTCAGTTAGAGGTTTCTTACTGTGTGGAACTAACTGAGATTCGGGGACTTGAGGAATTGGAATCCTTAATGAGTTTGTGCATTATTGGATGCAAGTCACTTGAAAATCTACCACATTTGCCAAACACAAAGATACAATACTATGAAGTCCCAGAGGAATATTCTTCAGAACATCAATCGAGTCACGGATGGGAAGAATATTCTTCAGAACATCAATCGAGTCACGGATGGGAAGAATATTCTTCAGAACACCAATTGAGTGACGGATGGGATACAAGCTAG

Network for GWHGAAZE011512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.534
	SRR8316896	Juvenile bud stage	1.108
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.195
	SRR8316900	Third green stage	0.856
	SRR8316901	Third green stage	0.630
	SRR8316898	Complete white stage	0.147
	SRR8316899	Complete white stage	0.689
	SRR8316903	Complete white stage	0.781
	SRR8316902	Silver flowering stage	0.184
	SRR8316904	Silver flowering stage	0.334
	SRR8316905	Silver flowering stage	0.161
	SRR8316906	Gold flowering stage	0.380
	SRR8316907	Gold flowering stage	0.650
	SRR8316908	Gold flowering stage	0.029
SRP132670	SRR6706286	Control	0.356
	SRR6706287	Light intensity 50%	0.315
	SRR6706288	Light intensity 20%	0.370
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.360
	CNS0095593	Slightly white alabastrum(diploid) 2	0.519
	CNS0095594	Slightly white alabastrum(diploid) 3	0.289
	CNS0095595	Whole white alabastrum(diploid) 2	0.393
	CNS0095596	Whole white alabastrum(diploid) 3	0.300
	CNS0095597	Whole white alabastrum(diploid) 4	0.169
	CNS0095598	Silvery flower (diploied) 1	0.870
	CNS0095599	Silvery flower (diploied) 2	0.518
	CNS0095600	Silvery flower (diploied) 3	0.543
	CNS0095601	Golden flower (diploid) 1	0.445
	CNS0095602	Golden flower (diploid) 2	0.390
	CNS0095603	Golden flower (diploid) 3	0.420
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.061
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.427
	CRR073298	Stem 2	0.241
	CRR073299	Stem 3	0.096
	CRR073300	Leaf 1	0.388
	CRR073301	Leaf 2	0.239
	CRR073302	Leaf 3	0.004
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.089
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.020
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.007
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.195
	CRR073319	Tawny withering 2	0.152
	CRR073320	Tawny withering 3	0.143