Gene detail

Detail information of GWHGAAZE011518

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010055706.1	1.38283E-57	PREDICTED: TMV resistance protein N-like [Eucalyptus grandis]
Swissprot	tr\|O23530\|SNC1_ARATH	2E-21	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|A0A059D2S8\|A0A059D2S8_EUCGR	1E-55	Uncharacterized protein {ECO:0000313\|EMBL:KCW85028.1}
TAIR10	AT5G36930.2	1E-21	Disease resistance protein (TIR-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	64364719	64366744	-
GWHAAZE00000003	mRNA	64364719	64366744	-
GWHAAZE00000003	exon	64364719	64365804	-
GWHAAZE00000003	exon	64365899	64366164	-
GWHAAZE00000003	exon	64366732	64366744	-
GWHAAZE00000003	CDS	64366732	64366744	-
GWHAAZE00000003	CDS	64365899	64366164	-
GWHAAZE00000003	CDS	64364719	64365804	-

Transcript Sequence
>GWHTAAZE011530 ATGGCTGATACTGGAATTGAGCAATTGGAATCATATGGTAATCGCCTTCTTCTGGGACAAGAGTTTGGCAAACTACCGAGCCTAAGGTTTCTTAGAGTGGGTTACGCAAACCTTAATGGAGATTTTAATCATCTTCTTTCAAAGTTAAGATGGCTTGAATGGAGTTACCGGGGGAAGTTCACTCCAACCAATCTTCATCTGAAGAATCTTGTTATACTGGATCTTTCAGGTAGCCACAGTACAATTACAGACAATTGGGAGGGTTGGAGTCAATTCAAGATGGCAAAAAAGTTGAAAGTTTTAAATCTCTCGTATTGCAAAGGCTTAAGCAGAGGTCCTAACTTTTCCACATTTACAACTTTAGAGAGATTGATTCTTAGGTCTGCGTTTTGTGAAGAGATCAACCCATCACTTGGGAATCTGAGAACCTTGAGAGTTCTAGACCTTGTAAGTTGCAAATCCTTAGAAACCCTCGACTGTTCCACATTTGAAGCTTTAGAGAGTTTGGACTTGCGTTCGTGTGAATCATTGCATCAAATAATTGGGCTCAACCAGTTAGAATCATTAACGCACTTGAATATATCATTTTGTCATTCCCTACAAAGATTACCGAATCTTTCAAACTTGAAGAAGTTAAAAGAGTTAGTGATGCGATTTTGCCCGAAACTAACCGAGATTGAAGGTGTAGACAAGTTGGAATCCTTAAAGCTTTGGAATATGAGGAGATGCAGTTCTATAGAAAAATTGCCTAGCCTGTCGAATTTGAGGACCCTAAAAGAACTTGATCTACGTGATTGCAGTAATTTACGTGAGGTTGAGGAGTTTGGGGATTTGGAATCCTTGGAAAATTTGGATATGAAGATGTGCAGATCTCTGGAAAGGTTACCTGATCTGTCGAACTTGACGAAACTAAAAAAGCTTTGTCTATCTAGTTGCAAGAAGTTACGGGAAGTTGAAGGCCTTGGAAGTTTGGAATCGTTGGAGAGCTTGGGCTTATCATCTTGCATATCACTTCAAAAAATCTTGGATTTGTCAAACTTAAAAAAACTAAAGAACCTAGAACTTCGGAGTCTCAAGAATTTAACCCAGATTTTGGGAATTGAGGAACTGGAATCCTTGGAGTCATTGGACATTAGTAACTGCAGGTCGATTGAAAAGTTGCCTAATTTATCAAACCTTAAAAAGTTAAAAGATATATCTGCTTGCGAATGTGAGAAACTAGCTGATATCAGAGGACTTGAGGAATTGAAATCCTTAACATCCTTGGATATTACTGGATGCAAATCGCTTCAAAATCTACCTCATTTGCCAAACACACGAATATGGCAGATGTATAAGGATCCCTCAGGTACGCCTCAAATTTAT

Network for GWHGAAZE011518

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0210

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13306.7	LRR_5	197	315	8.00E-07
PF13306.7	LRR_5	333	433	0.021

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.850
	SRR3591706	second leaf	5.683
	SRR3591707	mature leaf	4.710
	SRR3591708	Shoot apex	11.488
	SRR3591709	Stem	12.777
	SRR3591710	White floral bud	1.823
	SRR3591711	White flower	1.955
	SRR3591712	Green floral bud	1.695
	SRR3591713	Yellow flower	0.785
SRP173429	SRR8316895	Juvenile bud stage	1.867
	SRR8316896	Juvenile bud stage	1.960
	SRR8316897	Juvenile bud stage	1.325
	SRR8316894	Third green stage	1.452
	SRR8316900	Third green stage	3.465
	SRR8316901	Third green stage	2.284
	SRR8316898	Complete white stage	0.944
	SRR8316899	Complete white stage	4.591
	SRR8316903	Complete white stage	2.725
	SRR8316902	Silver flowering stage	0.637
	SRR8316904	Silver flowering stage	1.426
	SRR8316905	Silver flowering stage	0.677
	SRR8316906	Gold flowering stage	1.594
	SRR8316907	Gold flowering stage	1.094
	SRR8316908	Gold flowering stage	2.957
SRP132670	SRR6706286	Control	0.320
	SRR6706287	Light intensity 50%	0.321
	SRR6706288	Light intensity 20%	0.351
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.646
	CNS0095593	Slightly white alabastrum(diploid) 2	1.897
	CNS0095594	Slightly white alabastrum(diploid) 3	1.646
	CNS0095595	Whole white alabastrum(diploid) 2	1.602
	CNS0095596	Whole white alabastrum(diploid) 3	1.133
	CNS0095597	Whole white alabastrum(diploid) 4	1.133
	CNS0095598	Silvery flower (diploied) 1	3.749
	CNS0095599	Silvery flower (diploied) 2	2.814
	CNS0095600	Silvery flower (diploied) 3	2.490
	CNS0095601	Golden flower (diploid) 1	1.443
	CNS0095602	Golden flower (diploid) 2	2.890
	CNS0095603	Golden flower (diploid) 3	2.730
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.843
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.825
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.759
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.115
	CNS0095610	Silvery flower (tetraploid) 1	0.735
	CNS0095611	Silvery flower (tetraploid) 2	1.182
	CNS0095612	Silvery flower (tetraploid) 3	0.438
	CNS0095613	Golden flower (tetraploid) 1	0.054
	CNS0095614	Golden flower (tetraploid) 2	0.445
	CNS0095615	Golden flower (tetraploid) 3	0.146
CRA001975	CRR073297	Stem 1	1.035
	CRR073298	Stem 2	1.413
	CRR073299	Stem 3	0.544
	CRR073300	Leaf 1	0.899
	CRR073301	Leaf 2	1.545
	CRR073302	Leaf 3	0.270
	CRR073303	Juvenile bud 1	0.536
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	1.044
	CRR073306	Third green 1	0.029
	CRR073307	Third green 2	0.059
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.051
	CRR073310	Second white 2	0.297
	CRR073311	Second white 3	0.184
	CRR073312	Silver flowering 1	0.035
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.323
	CRR073316	Gold flowering 2	0.978
	CRR073317	Gold flowering 3	0.309
	CRR073318	Tawny withering 1	1.401
	CRR073319	Tawny withering 2	1.340
	CRR073320	Tawny withering 3	1.601