Detail information of GWHGAAZE011518


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010055706.11.38283E-57PREDICTED: TMV resistance protein N-like [Eucalyptus grandis]
Swissprottr|O23530|SNC1_ARATH2E-21Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBLtr|A0A059D2S8|A0A059D2S8_EUCGR1E-55Uncharacterized protein {ECO:0000313|EMBL:KCW85028.1}
TAIR10AT5G36930.21E-21Disease resistance protein (TIR-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene6436471964366744-
GWHAAZE00000003mRNA6436471964366744-
GWHAAZE00000003exon6436471964365804-
GWHAAZE00000003exon6436589964366164-
GWHAAZE00000003exon6436673264366744-
GWHAAZE00000003CDS6436673264366744-
GWHAAZE00000003CDS6436589964366164-
GWHAAZE00000003CDS6436471964365804-
Transcript Sequence

Network for GWHGAAZE011518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0210


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13306.7LRR_51973158.00E-07
PF13306.7LRR_53334330.021
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE011518.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301234567891011121314Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.850
SRR3591706second leaf5.683
SRR3591707mature leaf4.710
SRR3591708Shoot apex11.488
SRR3591709Stem12.777
SRR3591710White floral bud1.823
SRR3591711White flower1.955
SRR3591712Green floral bud1.695
SRR3591713Yellow flower0.785
SRP173429 SRR8316895Juvenile bud stage 1.867
SRR8316896Juvenile bud stage 1.960
SRR8316897Juvenile bud stage 1.325
SRR8316894Third green stage 1.452
SRR8316900Third green stage 3.465
SRR8316901Third green stage 2.284
SRR8316898Complete white stage 0.944
SRR8316899Complete white stage 4.591
SRR8316903Complete white stage 2.725
SRR8316902Silver flowering stage0.637
SRR8316904Silver flowering stage1.426
SRR8316905Silver flowering stage0.677
SRR8316906Gold flowering stage 1.594
SRR8316907Gold flowering stage 1.094
SRR8316908Gold flowering stage 2.957
SRP132670SRR6706286Control0.320
SRR6706287Light intensity 50%0.321
SRR6706288Light intensity 20%0.351
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.646
CNS0095593Slightly white alabastrum(diploid) 21.897
CNS0095594Slightly white alabastrum(diploid) 31.646
CNS0095595Whole white alabastrum(diploid) 21.602
CNS0095596Whole white alabastrum(diploid) 31.133
CNS0095597Whole white alabastrum(diploid) 41.133
CNS0095598Silvery flower (diploied) 13.749
CNS0095599Silvery flower (diploied) 22.814
CNS0095600Silvery flower (diploied) 32.490
CNS0095601Golden flower (diploid) 11.443
CNS0095602Golden flower (diploid) 22.890
CNS0095603Golden flower (diploid) 32.730
CNS0095604Slightly white alabastrum(tetraploid) 11.095
CNS0095605Slightly white alabastrum(tetraploid) 20.843
CNS0095606Slightly white alabastrum(tetraploid) 32.777
CNS0095607Whole white alabastrum(tetraploid) 10.825
CNS0095608Whole white alabastrum(tetraploid) 20.759
CNS0095609Whole white alabastrum(tetraploid) 31.115
CNS0095610Silvery flower (tetraploid) 10.735
CNS0095611Silvery flower (tetraploid) 21.182
CNS0095612Silvery flower (tetraploid) 30.438
CNS0095613Golden flower (tetraploid) 10.054
CNS0095614Golden flower (tetraploid) 20.445
CNS0095615Golden flower (tetraploid) 30.146
CRA001975CRR073297Stem 11.035
CRR073298Stem 21.413
CRR073299Stem 30.544
CRR073300Leaf 10.899
CRR073301Leaf 21.545
CRR073302Leaf 30.270
CRR073303Juvenile bud 10.536
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 31.044
CRR073306Third green 10.029
CRR073307Third green 20.059
CRR073308Third green 30.000
CRR073309Second white 10.051
CRR073310Second white 20.297
CRR073311Second white 30.184
CRR073312Silver flowering 10.035
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.323
CRR073316Gold flowering 20.978
CRR073317Gold flowering 30.309
CRR073318Tawny withering 11.401
CRR073319Tawny withering 21.340
CRR073320Tawny withering 31.601