Gene detail

Detail information of GWHGAAZE011540

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33312.1	1.16017E-88	hypothetical protein JCGZ_12861 [Jatropha curcas]
Swissprot	tr\|Q940T9\|COL4_ARATH	8E-11	Zinc finger protein CONSTANS-LIKE 4
trEMBL	tr\|A0A067KB16\|A0A067KB16_JATCU	4E-89	Uncharacterized protein {ECO:0000313\|EMBL:KDP33312.1}
TAIR10	AT1G04500.1	1E-57	CCT motif family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	64904015	64905864	+
GWHAAZE00000003	mRNA	64904015	64905864	+
GWHAAZE00000003	exon	64904015	64904477	+
GWHAAZE00000003	exon	64904919	64905107	+
GWHAAZE00000003	exon	64905529	64905669	+
GWHAAZE00000003	exon	64905757	64905864	+
GWHAAZE00000003	five_prime_UTR	64904015	64904279	+
GWHAAZE00000003	CDS	64904280	64904477	+
GWHAAZE00000003	CDS	64904919	64905107	+
GWHAAZE00000003	CDS	64905529	64905669	+
GWHAAZE00000003	CDS	64905757	64905864	+

Transcript Sequence
>GWHTAAZE011552 CGACTCCCCGGAAGACATAGAAAATGACATTTCTGCCTCCATAGATTTCACTTCCACCTTCACCCAGCAAGACCAATTTGATTTCTCCATATTGAACACTACTCAAATTCCATTAAACGAGGATAATAATTATCATCAATCTGTTATTCCTCCTCTTAATGTGTGCCTGCCTTTGCCTTTGCTATGCGAAGATCAAGATCAATGCTTTTCTGCTCTGCCTCCTAACTCTTATAGTACTACTTGTTCTTTTCTTGACCCATCATTAATGAATCTCAACTCTTTTCTGCCAAACAGCCTCACAAGTGCCACTACTTTGTCCACCGAAAATTCGGGGATTACTATTCCGGGGAATCTGTTTTTCGGATCCGAATTGCAGCATCAGGAATTAGACTTTCAAGGGGATAATGGTGGGATTTTCTACCAGGAACCTTTGCCTCGGGTTTATAACTCTTCCGAGATTCAGGCACTTAGTAATGAGAGCCAACATCTTGTGAATGGGGTTGGGAGTTCTAGTACCACTTTGGGATCTGAGATTACTAGCTTGGAAGATTCTACTTTCAAAGTTGGAAAACTCTCTGCTGAACAAAGGAAAGAGAAAATCCATAGATACATGAAGAAAAGGAATGAAAGGAATTTCAGCAAGAAAATTAAGTATGCATGCCGGAAAACGCTGGCAGACAGCAGGCCTCGAGTTAGAGGGAGGTTTGCAAAGAATGATGAGTTCGGGGATACCACTAGAACTACTTGTAGCACCCATGAAGAAGACACGGAGGAAGACGCGAGATCTATTCATGTAGTCATGAAGGAAGAACGACAAATGGTCGATCCGTCGGATATCTTTGCACATATTAGCAGCATGAATTCCTTCAAATGCAATTATCCGATCCAATCGTGGATATAA

Network for GWHGAAZE011540

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06203.15	CCT	108	150	2.00E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	7.854
	SRR3591711	White flower	1.225
	SRR3591712	Green floral bud	2.625
	SRR3591713	Yellow flower	0.471
SRP173429	SRR8316895	Juvenile bud stage	3.454
	SRR8316896	Juvenile bud stage	4.062
	SRR8316897	Juvenile bud stage	1.872
	SRR8316894	Third green stage	2.700
	SRR8316900	Third green stage	9.388
	SRR8316901	Third green stage	8.110
	SRR8316898	Complete white stage	1.585
	SRR8316899	Complete white stage	16.521
	SRR8316903	Complete white stage	4.904
	SRR8316902	Silver flowering stage	3.654
	SRR8316904	Silver flowering stage	5.094
	SRR8316905	Silver flowering stage	1.552
	SRR8316906	Gold flowering stage	2.509
	SRR8316907	Gold flowering stage	1.410
	SRR8316908	Gold flowering stage	1.038
SRP132670	SRR6706286	Control	3.009
	SRR6706287	Light intensity 50%	4.676
	SRR6706288	Light intensity 20%	3.936
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.870
	CNS0095593	Slightly white alabastrum(diploid) 2	9.970
	CNS0095594	Slightly white alabastrum(diploid) 3	8.502
	CNS0095595	Whole white alabastrum(diploid) 2	12.026
	CNS0095596	Whole white alabastrum(diploid) 3	8.872
	CNS0095597	Whole white alabastrum(diploid) 4	13.237
	CNS0095598	Silvery flower (diploied) 1	1.172
	CNS0095599	Silvery flower (diploied) 2	2.125
	CNS0095600	Silvery flower (diploied) 3	1.102
	CNS0095601	Golden flower (diploid) 1	0.887
	CNS0095602	Golden flower (diploid) 2	0.435
	CNS0095603	Golden flower (diploid) 3	0.949
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.809
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.723
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.121
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.647
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.970
	CNS0095610	Silvery flower (tetraploid) 1	1.503
	CNS0095611	Silvery flower (tetraploid) 2	1.775
	CNS0095612	Silvery flower (tetraploid) 3	4.749
	CNS0095613	Golden flower (tetraploid) 1	0.128
	CNS0095614	Golden flower (tetraploid) 2	6.665
	CNS0095615	Golden flower (tetraploid) 3	1.582
CRA001975	CRR073297	Stem 1	1.584
	CRR073298	Stem 2	1.902
	CRR073299	Stem 3	1.303
	CRR073300	Leaf 1	4.267
	CRR073301	Leaf 2	4.070
	CRR073302	Leaf 3	2.309
	CRR073303	Juvenile bud 1	3.535
	CRR073304	Juvenile bud 2	1.087
	CRR073305	Juvenile bud 3	5.321
	CRR073306	Third green 1	2.814
	CRR073307	Third green 2	2.615
	CRR073308	Third green 3	4.193
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.527
	CRR073311	Second white 3	0.533
	CRR073312	Silver flowering 1	1.142
	CRR073313	Silver flowering 2	1.223
	CRR073314	Silver flowering 3	1.327
	CRR073315	Gold flowering 1	0.865
	CRR073316	Gold flowering 2	0.333
	CRR073317	Gold flowering 3	0.679
	CRR073318	Tawny withering 1	1.720
	CRR073319	Tawny withering 2	1.523
	CRR073320	Tawny withering 3	1.507