Gene detail

Detail information of GWHGAAZE011541

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99303.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8W595\|SUVR4_ARATH	2E-133	Histone-lysine N-methyltransferase SUVR4
trEMBL	tr\|A0A068TVD1\|A0A068TVD1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99303.1}
TAIR10	AT3G04380.1	8E-109	SET-domain containing protein lysine methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	64927361	64935099	+
GWHAAZE00000003	mRNA	64927361	64935099	+
GWHAAZE00000003	exon	64927361	64927543	+
GWHAAZE00000003	exon	64927629	64927700	+
GWHAAZE00000003	exon	64928186	64928528	+
GWHAAZE00000003	exon	64929496	64929606	+
GWHAAZE00000003	exon	64929783	64930912	+
GWHAAZE00000003	exon	64931380	64931627	+
GWHAAZE00000003	exon	64932882	64932948	+
GWHAAZE00000003	exon	64933219	64933269	+
GWHAAZE00000003	exon	64934997	64935099	+
GWHAAZE00000003	CDS	64927361	64927543	+
GWHAAZE00000003	CDS	64927629	64927700	+
GWHAAZE00000003	CDS	64928186	64928528	+
GWHAAZE00000003	CDS	64929496	64929606	+
GWHAAZE00000003	CDS	64929783	64930912	+
GWHAAZE00000003	CDS	64931380	64931627	+
GWHAAZE00000003	CDS	64932882	64932948	+
GWHAAZE00000003	CDS	64933219	64933269	+
GWHAAZE00000003	CDS	64934997	64935044	+
GWHAAZE00000003	three_prime_UTR	64935045	64935099	+

Transcript Sequence
>GWHTAAZE011553 ATGGCGCATAAAGCAAAAGTTGCGAAGGCCTGCAAGGCAATGCAGGGTTATGGAATTGCTGAAGAAAAAGTAAAACCGGTGCTGAAAACTCTTTTGCGTTTATATGACAAGAACTGGAAGCATATTGAAGATGAAAACTACAGAGTTCTTTTAGATGCAATTTTTGACAATGCTGACCTTAAGAACTGGAAGCATATTGAAGATGAAAACTACAGAGTTCTTTTAGATGCTATTTTTGACAATGCTGAGCTTAAGAGAGAGGAAACGAAAAGCCTAGAATACCGGTTGAGAGATGAGCCGGAAGAATATGAGCCACCACTAAAAAGACGACTGAGGATTCAAAACGATCTGTCTTCATCCGCTCCTGGTGGCGGCTCCAGCCCAAACTTCAGTAGAAGTCCCACACATGGTGGAGCATCCTCTGCCAATTCTTCCCTCGTACCCTATAAGCGGAAAAGAAATAAATCTAGCTCCCCGCAAATATCAGAACTAGCAGTGGAGCCTAGTGTTGCTCTCTCTCCTGATAAGAATATGCTTGGTAAATATCCAGCTCATGACCAACCATTGTGTGAGGTTCCTCCAGCTGTTGTCCTTCCTGCTGATCCAAGTTTCTTAGAAGAAGACGGTTCTTCACATGAAAATCTCATTGGTGCTGATGAAAAATGCTCTGAATTCCAAGAATTGACACATAAAAATACAGAAGATAAATCTCCTCAAGATGGTTCGTCAAATGAAGTTTTTTATAATTTAGAAGCAAACGGTTTGGATACTCTGAATTCCCAGCTTGTGGATACGGACAAAAAAGAAGATGACGGACCAAAGTCATCAAAAATTGACATTGCTTCCTCCTCCAATGGAGAGGTGAAAATTGCTCTGATCTGTAACACTTCTAATCAATCCAATGGTCATATTCCAAGCATAGATTCTGTTCTGAAGGCGGTGGAGCAATGCCTTAAATCATATGGAATTATCGAACCTGGCTTCTCTCCACTGAATCTGATGAAAGATGTATGCGAATTATTGTCGATGGAGGGCACTAGCTCAAATGGTGATGAACGAGTGGAACCCGTTAACGTACAACCAACTCTTGATGTAATGAAGACGTTTAATCGACCACTTGTTCCGTTAAACTTCTCAAATGGACCACTCAAACATAATCTTATTCAAGTTCTACCTCATATTCCGAGGCCTTTGACTTCAAATGGGTTTGAATTTCTTCAATGTATTAAAGGCGTGGAGGTGAATTTTGACTTTTTTGTTGGTGAAAGGGATAATAAGTCAAAGACGTTTGACCGCCATGAATCTTCAAGTTCAAGCAGTATGGCAATTGTTCATAAGGACAACTCTTATTATGTTGTTGATGATATTACTAGAGCCGAAGAAGACAACAAAATTTCTTTGGTAAATGAAATCAACAATGAGTGTCGGCCTACCTTTCGTTACATTCGGAAAAATGTAACTTACAAAGATGCATATGTGAAGTTTCTTCTTGCTCGTATATCAGATGAAAATTGTTGTAAGGATTGCTCTGGGGATTGTTTGCGAGAAATACCTTGTGCTTGTGCCGGTGAAACTGGGGGTGAATTTGTTTACACACCAGAGGGGGTAGTTAAGGAAAAGTTTCTTGAAGAATGTATCTCGATGAATCGGGATCCCCAAAAGCACAACCTGTTTAAATGTAAAGATTGTCCTCTTGAACGATCTAAGGGAAAAGGGTTATCGGGTAAATGCAAGGGCCATTTAGTGAGAAAATTCATAAAAGAATGCTGGTATAAATGTGGTTGCAGTTTTAGCTGTGGAAATCGTGTTGTTCAGCGTGGCATTACAGTGAAATTGCAGATATTTATGACTCCTGAAGGTAAAGGGTGGGGTCTCAGAACGCTGGAGGACTTGCCTAAAGGTGCTTTTGTTTGTGAGTATGTGGGGGAAATAGTGACCAACACAGAGTTGTACGAGCGGAATGCACGAAATAGCGGTGAGAAGCACACCTACCCTGTGCTATTAGATGCAGACTGGGGTTCAGAGGGTGTCTTGAAGGATGAAGAGGCCCTTTGTTTGGATGCAACATTTTCTGGAAATGTTGCGAGGTGTTGTGATTCTAATATGGTTGAGATTCCTGTTGAAGTTGAGACACCTGATCATCACTATTACCACCTTGCTTTCTTCACTACAAGGAAGGTAAATGCTTTGGAAGAGCTAACTTGGGATACAGATCCAGCTCTTGATTCTCAGTTGACCAATCAACAGAAGTGAATATTTTTGAAGTAAAATCTCCCTTTATAGGAAATAAATCAACCTTAGTTTTTAC

Network for GWHGAAZE011541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10440.10	WIYLD	4	59	1.40E-21
PF10440.10	WIYLD	61	83	8.30E-06
PF05033.17	Pre-SET	457	602	2.00E-14
PF00856.29	SET	622	736	1.20E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.042
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.005
	SRR3591710	White floral bud	1.223
	SRR3591711	White flower	0.584
	SRR3591712	Green floral bud	0.486
	SRR3591713	Yellow flower	0.035
SRP173429	SRR8316895	Juvenile bud stage	1.672
	SRR8316896	Juvenile bud stage	2.512
	SRR8316897	Juvenile bud stage	0.931
	SRR8316894	Third green stage	1.285
	SRR8316900	Third green stage	1.301
	SRR8316901	Third green stage	1.575
	SRR8316898	Complete white stage	0.145
	SRR8316899	Complete white stage	0.584
	SRR8316903	Complete white stage	0.260
	SRR8316902	Silver flowering stage	0.095
	SRR8316904	Silver flowering stage	0.232
	SRR8316905	Silver flowering stage	0.027
	SRR8316906	Gold flowering stage	0.448
	SRR8316907	Gold flowering stage	0.343
	SRR8316908	Gold flowering stage	0.363
SRP132670	SRR6706286	Control	0.694
	SRR6706287	Light intensity 50%	0.644
	SRR6706288	Light intensity 20%	0.572
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.505
	CNS0095593	Slightly white alabastrum(diploid) 2	1.046
	CNS0095594	Slightly white alabastrum(diploid) 3	1.459
	CNS0095595	Whole white alabastrum(diploid) 2	1.079
	CNS0095596	Whole white alabastrum(diploid) 3	1.074
	CNS0095597	Whole white alabastrum(diploid) 4	0.721
	CNS0095598	Silvery flower (diploied) 1	1.024
	CNS0095599	Silvery flower (diploied) 2	0.222
	CNS0095600	Silvery flower (diploied) 3	0.863
	CNS0095601	Golden flower (diploid) 1	0.694
	CNS0095602	Golden flower (diploid) 2	1.127
	CNS0095603	Golden flower (diploid) 3	1.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.361
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.818
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.441
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.886
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.633
	CNS0095610	Silvery flower (tetraploid) 1	0.214
	CNS0095611	Silvery flower (tetraploid) 2	0.328
	CNS0095612	Silvery flower (tetraploid) 3	0.192
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.039
	CNS0095615	Golden flower (tetraploid) 3	0.066
CRA001975	CRR073297	Stem 1	1.464
	CRR073298	Stem 2	1.113
	CRR073299	Stem 3	0.796
	CRR073300	Leaf 1	0.728
	CRR073301	Leaf 2	0.470
	CRR073302	Leaf 3	0.524
	CRR073303	Juvenile bud 1	0.108
	CRR073304	Juvenile bud 2	0.156
	CRR073305	Juvenile bud 3	0.169
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.115
	CRR073308	Third green 3	0.052
	CRR073309	Second white 1	0.065
	CRR073310	Second white 2	0.012
	CRR073311	Second white 3	0.070
	CRR073312	Silver flowering 1	0.020
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.029
	CRR073316	Gold flowering 2	0.182
	CRR073317	Gold flowering 3	0.081
	CRR073318	Tawny withering 1	0.049
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.066