Gene detail

Detail information of GWHGAAZE011548

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007160468.1	2.27365E-24	hypothetical protein PHAVU_002G324700g [Phaseolus vulgaris]
Swissprot	tr\|O48844\|PSD1A_ARATH	5E-24	26S proteasome non-ATPase regulatory subunit 1 homolog A
trEMBL	tr\|V7CQI1\|V7CQI1_PHAVU	8E-25	Uncharacterized protein {ECO:0000313\|EMBL:ESW32462.1}
TAIR10	AT2G32730.1	1E-22	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	65005148	65018417	+
GWHAAZE00000003	mRNA	65005148	65018417	+
GWHAAZE00000003	exon	65005148	65005196	+
GWHAAZE00000003	exon	65006210	65006387	+
GWHAAZE00000003	exon	65006800	65006852	+
GWHAAZE00000003	exon	65006944	65007069	+
GWHAAZE00000003	exon	65014924	65015044	+
GWHAAZE00000003	exon	65015119	65015411	+
GWHAAZE00000003	exon	65018125	65018417	+
GWHAAZE00000003	CDS	65005148	65005196	+
GWHAAZE00000003	CDS	65006210	65006387	+
GWHAAZE00000003	CDS	65006800	65006852	+
GWHAAZE00000003	CDS	65006944	65007069	+
GWHAAZE00000003	CDS	65014924	65015044	+
GWHAAZE00000003	CDS	65015119	65015411	+
GWHAAZE00000003	CDS	65018125	65018417	+

Transcript Sequence
>GWHTAAZE011560 ATGGAGGAAGAATTAGCTGCTCCATTTTCCATTTCTACTGGGAAAAGAGTGAAAATCCCTACGGCAGTTTTGTCTGTGTCAGCAAGAGTTAAGGCTAGGGCTAGTAAGAAAGAGGTGGATCAAAAGGCCAAAAACGCTGATAAGTCGTCTTCTGGGTCAGCCGGTCAGGAGCATCCTCTTCTACCAAAGGGAAATTGCCTGGAGACAGGGAAGGTGATTCTATGCAGGTTGAAGATAGTAGTAGTCCAACAGGGCCAGAAGCTTCACGAGATTCAAGAAAGTCCCTTTTACAATATGATGGCGGTATTTTTGTTCGCTAATCGTTATCATTCCAACAAAAGGACTTTGTGTTTTGTGTATGGTCGCAATTTCATTTTGGTTAAGGATGCTCCCATCTCCCTTTCATCCAAAGCTTTAGTTGAATATGCAAGTCTTAGGACTAAGGCAGCAGAGTCTGATGATGAACCAGCAGCAGCAACAAATACTGATCCTAGGTTGGCGGCGGTGATCAAAAGGATGGTTGAGAATCAATATCTTTACAAATGGTCCTGTTTGCCTAATGTGATATACGTACCTCAACTTCTTGTTAAAGCATTTCAAAAGCTGCCCTCACCCAATTGCTTGAGTATCTGCAAGTGTGTCATGTTTTTGGACGAACCAGAGGGTGTTACAGTCACTTTGGAAAAACCTCTATGTTCTGATAATAAGGACGATGCTTTGCTAGCCTTACAAATAGCTTTCAATCTCAAGAGAACGGGCTCCAAGTGTTCCTTCCAGACATCAAAGATTGGCTATCCAAACCCAAAGAATCTAATGAGCGATGAGGATTTAGTTCTGATTGATAGTGAGAAGTTTACCAAAGAGGCTTGGGAAGCAATTGCTTATGCACTGAAAATGGCAGCTAGCATGCAACAAAAGGTGGAGACGGAGCATCTAATGAGAGCACTATTGGAACAAAAGCAAAGGCTTATTAATTGTGTTTTAAATGAAGTAAGCATGGATATCGCTCTGCTCTTGAAAATTACCAATGAATTTATTCATTGTCCACCAAAGAATATTGGTGAAGAAAATGGTTCAGTTATAGGGAGGGAATTGGCAGCATTGTTGCAATGA

Network for GWHGAAZE011548

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0195

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02861.21	Clp_N	303	346	1.60E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03032	PSMD1, RPN2	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.610
	SRR3591706	second leaf	0.482
	SRR3591707	mature leaf	0.895
	SRR3591708	Shoot apex	1.084
	SRR3591709	Stem	1.353
	SRR3591710	White floral bud	0.806
	SRR3591711	White flower	0.967
	SRR3591712	Green floral bud	1.085
	SRR3591713	Yellow flower	0.155
SRP173429	SRR8316895	Juvenile bud stage	1.464
	SRR8316896	Juvenile bud stage	1.396
	SRR8316897	Juvenile bud stage	0.594
	SRR8316894	Third green stage	0.636
	SRR8316900	Third green stage	1.484
	SRR8316901	Third green stage	1.135
	SRR8316898	Complete white stage	0.316
	SRR8316899	Complete white stage	1.650
	SRR8316903	Complete white stage	0.897
	SRR8316902	Silver flowering stage	0.374
	SRR8316904	Silver flowering stage	0.270
	SRR8316905	Silver flowering stage	0.268
	SRR8316906	Gold flowering stage	0.374
	SRR8316907	Gold flowering stage	0.745
	SRR8316908	Gold flowering stage	0.249
SRP132670	SRR6706286	Control	0.511
	SRR6706287	Light intensity 50%	0.738
	SRR6706288	Light intensity 20%	0.611
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.896
	CNS0095593	Slightly white alabastrum(diploid) 2	1.679
	CNS0095594	Slightly white alabastrum(diploid) 3	2.344
	CNS0095595	Whole white alabastrum(diploid) 2	2.400
	CNS0095596	Whole white alabastrum(diploid) 3	1.551
	CNS0095597	Whole white alabastrum(diploid) 4	2.299
	CNS0095598	Silvery flower (diploied) 1	1.816
	CNS0095599	Silvery flower (diploied) 2	1.701
	CNS0095600	Silvery flower (diploied) 3	1.018
	CNS0095601	Golden flower (diploid) 1	2.301
	CNS0095602	Golden flower (diploid) 2	0.831
	CNS0095603	Golden flower (diploid) 3	0.702
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.410
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.952
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.705
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.533
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.583
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.975
	CNS0095610	Silvery flower (tetraploid) 1	0.664
	CNS0095611	Silvery flower (tetraploid) 2	0.727
	CNS0095612	Silvery flower (tetraploid) 3	0.564
	CNS0095613	Golden flower (tetraploid) 1	0.196
	CNS0095614	Golden flower (tetraploid) 2	0.538
	CNS0095615	Golden flower (tetraploid) 3	0.048
CRA001975	CRR073297	Stem 1	0.959
	CRR073298	Stem 2	0.397
	CRR073299	Stem 3	0.039
	CRR073300	Leaf 1	1.236
	CRR073301	Leaf 2	1.220
	CRR073302	Leaf 3	0.090
	CRR073303	Juvenile bud 1	0.121
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.216
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.058
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.087
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.368
	CRR073319	Tawny withering 2	0.963
	CRR073320	Tawny withering 3	0.616