Detail information of GWHGAAZE011562


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010274506.13.1989E-30PREDICTED: F-box protein CPR30-like [Nelumbo nucifera]
Swissprottr|Q8GXC7|FBK50_ARATH7E-19F-box/kelch-repeat protein At3g06240
trEMBLtr|A0A061EK90|A0A061EK90_THECC7E-29Uncharacterized protein {ECO:0000313|EMBL:EOY05266.1}
TAIR10AT3G06240.11E-17F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene6554016565541372-
GWHAAZE00000003mRNA6554016565541372-
GWHAAZE00000003exon6554016565540639-
GWHAAZE00000003exon6554071765541372-
GWHAAZE00000003CDS6554071765541372-
GWHAAZE00000003CDS6554016565540639-
Transcript Sequence

Network for GWHGAAZE011562

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box19554.10E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.842
SRR3591711White flower0.000
SRR3591712Green floral bud2.255
SRR3591713Yellow flower0.071
SRP173429 SRR8316895Juvenile bud stage 0.610
SRR8316896Juvenile bud stage 1.285
SRR8316897Juvenile bud stage 0.461
SRR8316894Third green stage 0.409
SRR8316900Third green stage 1.598
SRR8316901Third green stage 1.170
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.122
SRR6706287Light intensity 50%0.101
SRR6706288Light intensity 20%0.086
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.562
CNS0095593Slightly white alabastrum(diploid) 21.403
CNS0095594Slightly white alabastrum(diploid) 31.864
CNS0095595Whole white alabastrum(diploid) 21.334
CNS0095596Whole white alabastrum(diploid) 31.508
CNS0095597Whole white alabastrum(diploid) 41.872
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.076
CNS0095600Silvery flower (diploied) 30.076
CNS0095601Golden flower (diploid) 10.041
CNS0095602Golden flower (diploid) 20.033
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 12.375
CNS0095605Slightly white alabastrum(tetraploid) 21.084
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 11.304
CNS0095608Whole white alabastrum(tetraploid) 21.668
CNS0095609Whole white alabastrum(tetraploid) 31.236
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.072
CNS0095612Silvery flower (tetraploid) 30.155
CNS0095613Golden flower (tetraploid) 10.086
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.187
CRR073298Stem 20.398
CRR073299Stem 30.097
CRR073300Leaf 10.086
CRR073301Leaf 20.246
CRR073302Leaf 30.036
CRR073303Juvenile bud 10.038
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.078
CRR073307Third green 20.057
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000